COG3311


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG3311, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 37 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description DNA-binding transcriptional regulator AlpA
Function(s) descr. Transcription (K)
Mobilome: prophages, transposons (X)

Occurence in the database

COG3311 is associated with 37 different proteins (see tab "Protein list" and "Profile")
The 37 proteins are classified into 9 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2687 FBDBKF_05265 58710 59267 -1 alpA DNA-binding transcriptional regulator AlpA Morganella morganii S1
1 group_1936 FBDBKF_14525 99492 99713 -1 alpA AlpA family phage regulatory protein Morganella morganii S1
2 group_2949 FBDBKF_15620 56021 56365 -1 alpA Phage transcriptional regulator, AlpA Morganella morganii S1
3 group_3773 FBDBKF_15630 58114 58314 -1 Transcriptional regulator Morganella morganii S1
4 group_1936 FBDBKF_16620 8427 8648 -1 alpA AlpA family transcriptional regulator Morganella morganii S1
5 group_413 FBDBKF_17920 23978 24166 1 alpA DNA-binding transcriptional regulator AlpA Morganella morganii S1
6 group_3555 FBDBKF_18550 31044 31334 1 alpA AlpA family phage regulatory protein Morganella morganii S1
7 group_3555 EHELCC_01835 356507 356797 -1 alpA AlpA family phage regulatory protein Morganella morganii S2
8 group_413 EHELCC_06415 12210 12398 -1 alpA DNA-binding transcriptional regulator AlpA Morganella morganii S2
9 group_1936 EHELCC_07755 17272 17493 1 alpA AlpA family phage regulatory protein Morganella morganii S2
10 group_2687 EHELCC_12325 122227 122784 1 alpA DNA-binding transcriptional regulator AlpA Morganella morganii S2
11 group_2949 EHELCC_15980 55321 55665 -1 alpA Phage transcriptional regulator, AlpA Morganella morganii S2
12 group_3555 NLDBIP_01625 323339 323629 1 alpA AlpA family phage regulatory protein Morganella morganii S4
13 group_413 NLDBIP_06735 12083 12271 -1 alpA DNA-binding transcriptional regulator AlpA Morganella morganii S4
14 group_1936 NLDBIP_08080 17272 17493 1 alpA AlpA family phage regulatory protein Morganella morganii S4
15 group_2687 NLDBIP_12665 122182 122739 1 alpA DNA-binding transcriptional regulator AlpA Morganella morganii S4
16 group_3773 NLDBIP_16380 23049 23249 1 Transcriptional regulator Morganella morganii S4
17 group_2949 NLDBIP_16390 24998 25342 1 alpA Phage transcriptional regulator, AlpA Morganella morganii S4
18 group_3555 LHKJJB_00410 69056 69346 -1 alpA AlpA family phage regulatory protein Morganella morganii S3
19 group_1936 LHKJJB_06185 239666 239887 -1 alpA AlpA family phage regulatory protein Morganella morganii S3
20 group_2687 LHKJJB_12525 122227 122784 1 alpA DNA-binding transcriptional regulator AlpA Morganella morganii S3
21 group_2949 LHKJJB_16415 55321 55665 -1 alpA Phage transcriptional regulator, AlpA Morganella morganii S3
22 group_413 LHKJJB_19335 11994 12182 -1 alpA DNA-binding transcriptional regulator AlpA Morganella morganii S3
23 group_3555 HKOGLL_00450 74567 74857 -1 alpA AlpA family phage regulatory protein Morganella morganii S5
24 group_413 HKOGLL_04655 257370 257558 1 alpA DNA-binding transcriptional regulator AlpA Morganella morganii S5
25 group_1936 HKOGLL_04730 1863 2084 1 alpA AlpA family phage regulatory protein Morganella morganii S5
26 group_2687 HKOGLL_11140 122227 122784 1 alpA DNA-binding transcriptional regulator AlpA Morganella morganii S5
27 group_2949 HKOGLL_16185 55321 55665 -1 alpA Phage transcriptional regulator, AlpA Morganella morganii S5
28 group_3981 F4V73_RS02015 437204 437416 -1 helix-turn-helix domain-containing protein Morganella psychrotolerans
29 group_413 F4V73_RS02460 521154 521372 1 AlpA family transcriptional regulator Morganella psychrotolerans
30 group_2687 F4V73_RS05720 1215333 1215890 -1 DNA-binding protein Morganella psychrotolerans
31 group_4045 F4V73_RS06240 1306554 1306781 -1 transcriptional regulator Morganella psychrotolerans
32 group_413 F4V73_RS10120 134064 134264 -1 AlpA family transcriptional regulator Morganella psychrotolerans
33 group_4596 PMI_RS12310 2729936 2730130 -1 DNA-binding protein Proteus mirabilis HI4320
34 group_413 PMI_RS12875 2857629 2857817 1 AlpA family transcriptional regulator Proteus mirabilis HI4320
35 group_2949 PMI_RS15555 3461648 3461830 -1 helix-turn-helix domain-containing protein Proteus mirabilis HI4320
36 group_1936 PMI_RS17330 3806544 3806774 -1 AlpA family transcriptional regulator Proteus mirabilis HI4320