COG3311
Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG3311, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries
within the database. 37 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.
Description
Description | DNA-binding transcriptional regulator AlpA |
---|---|
Function(s) descr. | Transcription (K) Mobilome: prophages, transposons (X) |
Occurence in the database
COG3311 is associated with 37 different proteins (see tab "Protein list" and "Profile") |
The 37 proteins are classified into 9 different orthogroup(s) |
# | Orthogroup | Locus | Start | Stop | S. | Gene | Product | Organism |
---|---|---|---|---|---|---|---|---|
0 | group_2687 | FBDBKF_05265 | 58710 | 59267 | -1 | alpA | DNA-binding transcriptional regulator AlpA | Morganella morganii S1 |
1 | group_1936 | FBDBKF_14525 | 99492 | 99713 | -1 | alpA | AlpA family phage regulatory protein | Morganella morganii S1 |
2 | group_2949 | FBDBKF_15620 | 56021 | 56365 | -1 | alpA | Phage transcriptional regulator, AlpA | Morganella morganii S1 |
3 | group_3773 | FBDBKF_15630 | 58114 | 58314 | -1 | Transcriptional regulator | Morganella morganii S1 | |
4 | group_1936 | FBDBKF_16620 | 8427 | 8648 | -1 | alpA | AlpA family transcriptional regulator | Morganella morganii S1 |
5 | group_413 | FBDBKF_17920 | 23978 | 24166 | 1 | alpA | DNA-binding transcriptional regulator AlpA | Morganella morganii S1 |
6 | group_3555 | FBDBKF_18550 | 31044 | 31334 | 1 | alpA | AlpA family phage regulatory protein | Morganella morganii S1 |
7 | group_3555 | EHELCC_01835 | 356507 | 356797 | -1 | alpA | AlpA family phage regulatory protein | Morganella morganii S2 |
8 | group_413 | EHELCC_06415 | 12210 | 12398 | -1 | alpA | DNA-binding transcriptional regulator AlpA | Morganella morganii S2 |
9 | group_1936 | EHELCC_07755 | 17272 | 17493 | 1 | alpA | AlpA family phage regulatory protein | Morganella morganii S2 |
10 | group_2687 | EHELCC_12325 | 122227 | 122784 | 1 | alpA | DNA-binding transcriptional regulator AlpA | Morganella morganii S2 |
11 | group_2949 | EHELCC_15980 | 55321 | 55665 | -1 | alpA | Phage transcriptional regulator, AlpA | Morganella morganii S2 |
12 | group_3555 | NLDBIP_01625 | 323339 | 323629 | 1 | alpA | AlpA family phage regulatory protein | Morganella morganii S4 |
13 | group_413 | NLDBIP_06735 | 12083 | 12271 | -1 | alpA | DNA-binding transcriptional regulator AlpA | Morganella morganii S4 |
14 | group_1936 | NLDBIP_08080 | 17272 | 17493 | 1 | alpA | AlpA family phage regulatory protein | Morganella morganii S4 |
15 | group_2687 | NLDBIP_12665 | 122182 | 122739 | 1 | alpA | DNA-binding transcriptional regulator AlpA | Morganella morganii S4 |
16 | group_3773 | NLDBIP_16380 | 23049 | 23249 | 1 | Transcriptional regulator | Morganella morganii S4 | |
17 | group_2949 | NLDBIP_16390 | 24998 | 25342 | 1 | alpA | Phage transcriptional regulator, AlpA | Morganella morganii S4 |
18 | group_3555 | LHKJJB_00410 | 69056 | 69346 | -1 | alpA | AlpA family phage regulatory protein | Morganella morganii S3 |
19 | group_1936 | LHKJJB_06185 | 239666 | 239887 | -1 | alpA | AlpA family phage regulatory protein | Morganella morganii S3 |
20 | group_2687 | LHKJJB_12525 | 122227 | 122784 | 1 | alpA | DNA-binding transcriptional regulator AlpA | Morganella morganii S3 |
21 | group_2949 | LHKJJB_16415 | 55321 | 55665 | -1 | alpA | Phage transcriptional regulator, AlpA | Morganella morganii S3 |
22 | group_413 | LHKJJB_19335 | 11994 | 12182 | -1 | alpA | DNA-binding transcriptional regulator AlpA | Morganella morganii S3 |
23 | group_3555 | HKOGLL_00450 | 74567 | 74857 | -1 | alpA | AlpA family phage regulatory protein | Morganella morganii S5 |
24 | group_413 | HKOGLL_04655 | 257370 | 257558 | 1 | alpA | DNA-binding transcriptional regulator AlpA | Morganella morganii S5 |
25 | group_1936 | HKOGLL_04730 | 1863 | 2084 | 1 | alpA | AlpA family phage regulatory protein | Morganella morganii S5 |
26 | group_2687 | HKOGLL_11140 | 122227 | 122784 | 1 | alpA | DNA-binding transcriptional regulator AlpA | Morganella morganii S5 |
27 | group_2949 | HKOGLL_16185 | 55321 | 55665 | -1 | alpA | Phage transcriptional regulator, AlpA | Morganella morganii S5 |
28 | group_3981 | F4V73_RS02015 | 437204 | 437416 | -1 | helix-turn-helix domain-containing protein | Morganella psychrotolerans | |
29 | group_413 | F4V73_RS02460 | 521154 | 521372 | 1 | AlpA family transcriptional regulator | Morganella psychrotolerans | |
30 | group_2687 | F4V73_RS05720 | 1215333 | 1215890 | -1 | DNA-binding protein | Morganella psychrotolerans | |
31 | group_4045 | F4V73_RS06240 | 1306554 | 1306781 | -1 | transcriptional regulator | Morganella psychrotolerans | |
32 | group_413 | F4V73_RS10120 | 134064 | 134264 | -1 | AlpA family transcriptional regulator | Morganella psychrotolerans | |
33 | group_4596 | PMI_RS12310 | 2729936 | 2730130 | -1 | DNA-binding protein | Proteus mirabilis HI4320 | |
34 | group_413 | PMI_RS12875 | 2857629 | 2857817 | 1 | AlpA family transcriptional regulator | Proteus mirabilis HI4320 | |
35 | group_2949 | PMI_RS15555 | 3461648 | 3461830 | -1 | helix-turn-helix domain-containing protein | Proteus mirabilis HI4320 | |
36 | group_1936 | PMI_RS17330 | 3806544 | 3806774 | -1 | AlpA family transcriptional regulator | Proteus mirabilis HI4320 |