Homologs in group_4437

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0 homologs were identified in 0 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product

Distribution of the homologs in the orthogroup group_4437

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_4437

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P9WKT7 3.91e-05 40 31 0 48 1 Rv0500A Putative DNA-binding protein Rv0500A Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WKT6 3.91e-05 40 31 0 48 4 MT0521 Putative DNA-binding protein MT0521 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS15555
Feature type CDS
Gene -
Product helix-turn-helix domain-containing protein
Location 3461648 - 3461830 (strand: -1)
Length 183 (nucleotides) / 60 (amino acids)
In genomic island GI63

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_4437
Orthogroup size 1
N. genomes 1

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Genomic region

Domains

PF12728 Helix-turn-helix domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3311 Transcription (K)
Mobilome: prophages, transposons (X)
KX DNA-binding transcriptional regulator AlpA

Protein Sequence

MSDEILTLKELADYLKLAEKTTYRLTAEGKLPGFKVGGSWRFRKSDIDSWITKQKNSGYR

Flanking regions ( +/- flanking 50bp)

ACTCCTCAATTTTCTCATATTCTCGCTTCCTAGAAAATTGAGGGGTTACTATGTCTGATGAAATACTCACACTTAAAGAGCTGGCTGATTATCTCAAGCTAGCTGAAAAGACTACATACAGGTTGACAGCAGAGGGTAAATTACCAGGATTTAAAGTCGGAGGTAGTTGGCGCTTTAGAAAAAGTGACATTGATAGCTGGATAACCAAACAAAAAAATAGTGGGTATCGATAGATTTCTACTATCCTCTGATGTATCTTAACCTCAATAACTGTTTTTATATA