Homologs in group_2949

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_15620 FBDBKF_15620 100.0 Morganella morganii S1 alpA Phage transcriptional regulator, AlpA
EHELCC_15980 EHELCC_15980 100.0 Morganella morganii S2 alpA Phage transcriptional regulator, AlpA
NLDBIP_16390 NLDBIP_16390 100.0 Morganella morganii S4 alpA Phage transcriptional regulator, AlpA
LHKJJB_16415 LHKJJB_16415 100.0 Morganella morganii S3 alpA Phage transcriptional regulator, AlpA
PMI_RS15555 PMI_RS15555 47.5 Proteus mirabilis HI4320 - helix-turn-helix domain-containing protein

Distribution of the homologs in the orthogroup group_2949

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2949

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism

  • Number of RefSeq hits:

General

Source Morganella morganii S5
Locus tag HKOGLL_16185
Feature type CDS
Gene alpA
Product Phage transcriptional regulator, AlpA
Location 55321 - 55665 (strand: -1)
Length 345 (nucleotides) / 114 (amino acids)

Contig

Accession ZDB_696
Length 80662 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2949
Orthogroup size 6
N. genomes 6

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Genomic region

Domains

PF12728 Helix-turn-helix domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3311 Transcription (K)
Mobilome: prophages, transposons (X)		 KX DNA-binding transcriptional regulator AlpA

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07733 prophage regulatory protein - -

Protein Sequence

MTEKEMLQRMLMDMSLLKKLITEHIKNEQRPDTTKEILTVEECAELTGLKKSTLYRLTHERKIPFFKPNGNRVFFRRADILAWLQSNRVASSYEIDKAAADHLVTNRKLYGRRY

Flanking regions ( +/- flanking 50bp)

CCCACTTTCCCACATTTCCCTGTTCGATTTTGAGGTAAAGGAGTATCAACATGACTGAAAAAGAGATGCTTCAGCGCATGCTGATGGATATGTCATTGCTTAAAAAACTGATTACCGAGCATATCAAAAACGAGCAACGTCCTGACACAACAAAGGAAATCCTGACAGTTGAGGAATGTGCTGAGCTGACAGGGTTAAAGAAAAGCACTTTGTACCGGTTGACTCACGAACGCAAGATCCCATTCTTCAAACCTAATGGTAACCGTGTGTTCTTCAGGAGAGCCGATATCTTGGCTTGGTTGCAGAGTAACCGAGTGGCTTCTTCTTATGAGATTGATAAAGCCGCTGCTGATCATCTAGTGACTAACCGAAAATTGTATGGCCGGAGATATTAGGTTGAGGTTTAACCTTTTGAAAATAAATAGAAATGGTTGGATGCGTTACA