Homologs in group_413

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7 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_17920 FBDBKF_17920 100.0 Morganella morganii S1 alpA DNA-binding transcriptional regulator AlpA
EHELCC_06415 EHELCC_06415 100.0 Morganella morganii S2 alpA DNA-binding transcriptional regulator AlpA
NLDBIP_06735 NLDBIP_06735 100.0 Morganella morganii S4 alpA DNA-binding transcriptional regulator AlpA
LHKJJB_19335 LHKJJB_19335 100.0 Morganella morganii S3 alpA DNA-binding transcriptional regulator AlpA
HKOGLL_04655 HKOGLL_04655 100.0 Morganella morganii S5 alpA DNA-binding transcriptional regulator AlpA
F4V73_RS02460 F4V73_RS02460 50.8 Morganella psychrotolerans - AlpA family transcriptional regulator
F4V73_RS10120 F4V73_RS10120 50.8 Morganella psychrotolerans - AlpA family transcriptional regulator

Distribution of the homologs in the orthogroup group_413

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_413

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P12552 1.17e-07 47 37 1 62 4 None Uncharacterized protein ORF88 Enterobacteria phage P4
P33997 2.17e-06 43 36 2 61 4 alpA DNA-binding transcriptional activator AlpA Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS12875
Feature type CDS
Gene -
Product AlpA family transcriptional regulator
Location 2857629 - 2857817 (strand: 1)
Length 189 (nucleotides) / 62 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_413
Orthogroup size 8
N. genomes 7

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Genomic region

Domains

PF05930 Prophage CP4-57 regulatory protein (AlpA)

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3311 Transcription (K)
Mobilome: prophages, transposons (X)		 KX DNA-binding transcriptional regulator AlpA

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07733 prophage regulatory protein - -

Protein Sequence

MTSHQLLRLKQVEEKTGLKRSQIYLYMKGGSFPRSIIKVGPASVAWLESEIDEWINLKLANR

Flanking regions ( +/- flanking 50bp)

CGCTTATGCTTTTTTATCTTCTCCAACCCCACTCTACACTGGAGAAAATCATGACATCACATCAGTTATTACGCCTGAAACAGGTCGAAGAAAAAACCGGTCTGAAACGCTCGCAAATCTATCTGTATATGAAAGGGGGCTCTTTTCCTCGTTCAATAATAAAGGTTGGCCCTGCCAGCGTAGCCTGGCTCGAATCTGAAATTGATGAATGGATCAACCTCAAATTAGCCAACCGCTGAAGTGTTTAAGGAAGGTCCGAAATCATGATTCCGTCTCTGAATTACGCCGT