Orthogroup:group_2949


Homologs in group_2949

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_15620 FBDBKF_15620 Morganella morganii S1 alpA Phage transcriptional regulator, AlpA
EHELCC_15980 EHELCC_15980 Morganella morganii S2 alpA Phage transcriptional regulator, AlpA
NLDBIP_16390 NLDBIP_16390 Morganella morganii S4 alpA Phage transcriptional regulator, AlpA
LHKJJB_16415 LHKJJB_16415 Morganella morganii S3 alpA Phage transcriptional regulator, AlpA
HKOGLL_16185 HKOGLL_16185 Morganella morganii S5 alpA Phage transcriptional regulator, AlpA
PMI_RS15555 PMI_RS15555 Proteus mirabilis HI4320 - helix-turn-helix domain-containing protein

Distribution of group_2949 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_2949 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_2949

Orthogroup content: 6 members

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This page summarizes the annotation of all members of the orthologous group group_2949.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 alpA 5
2 - 1

Product

# Product Occurence
1 Phage transcriptional regulator, AlpA 5
2 helix-turn-helix domain-containing protein 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG3311 6 KX Transcription (K)
Mobilome: prophages, transposons (X)		 DNA-binding transcriptional regulator AlpA

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K07733 6 prophage regulatory protein - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF12728 6 Helix-turn-helix domain

Annotations of the 2 SwissProt hits

Annotation Number of occurrences
Putative DNA-binding protein MT0521 1
Putative DNA-binding protein Rv0500A 1

Protein length

Min length 60
Max length 114
Mean length (sd) 105.0 (22.0)
Median length 114.0

Protein length distribution