Homologs in group_136

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10 homologs were identified in 1 genome with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
PMI_RS02640 PMI_RS02640 30.6 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS05165 PMI_RS05165 24.9 Proteus mirabilis HI4320 pefC PefC/AfrB family outer membrane usher protein
PMI_RS05725 PMI_RS05725 25.2 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS05765 PMI_RS05765 25.3 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS07095 PMI_RS07095 34.5 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS10900 PMI_RS10900 33.8 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS13455 PMI_RS13455 36.7 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS15280 PMI_RS15280 23.0 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS16660 PMI_RS16660 33.5 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS17130 PMI_RS17130 31.4 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein

Distribution of the homologs in the orthogroup group_136

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_136

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P42915 1.07e-160 492 36 16 808 2 yraJ Outer membrane usher protein YraJ Escherichia coli (strain K12)
P43662 1.7e-151 468 34 23 830 3 lpfC Outer membrane usher protein LpfC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P37924 5.46e-149 462 33 20 869 3 fimD Outer membrane usher protein FimD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P30130 5.12e-144 450 33 26 869 1 fimD Outer membrane usher protein FimD Escherichia coli (strain K12)
P75857 6.54e-140 439 33 23 838 2 elfC Probable outer membrane usher protein ElfC Escherichia coli (strain K12)
Q8XDD1 7.12e-140 439 33 23 838 2 elfC Probable outer membrane usher protein ElfC Escherichia coli O157:H7
P46009 1.13e-137 433 32 23 886 3 focD Outer membrane usher protein FocD Escherichia coli
P77468 1.08e-132 420 32 24 877 2 sfmD Outer membrane usher protein SfmD Escherichia coli (strain K12)
P33129 1.85e-116 377 32 29 884 1 htrE Outer membrane usher protein HtrE Escherichia coli (strain K12)
P53517 1.25e-115 375 28 19 842 3 afaC Outer membrane usher protein AfaC Escherichia coli
P33408 9.53e-112 364 31 21 809 3 myfC Outer membrane usher protein MyfC Yersinia enterocolitica
Q56983 1.9e-111 363 32 22 825 3 psaC Outer membrane usher protein PsaC Yersinia pseudotuberculosis serotype I (strain IP32953)
P31527 1.9e-111 363 32 22 825 3 psaC Outer membrane usher protein PsaC Yersinia pestis
P26949 7.74e-110 359 29 22 845 1 caf1A F1 capsule-anchoring protein Yersinia pestis
P46000 1.01e-105 348 31 17 826 3 fasD Outer membrane usher protein FasD Escherichia coli
P45997 5.22e-104 343 30 24 831 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P33397 2.28e-103 342 30 24 831 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P45998 2.04e-99 331 30 25 845 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P21647 2.58e-95 320 29 14 757 3 mrkC Outer membrane usher protein MrkC Klebsiella pneumoniae
P46005 5.09e-95 319 28 18 829 3 aggC Outer membrane usher protein AggC Escherichia coli
Q8X5K8 2.76e-93 305 36 13 509 2 lpfC' Probable outer membrane usher protein LpfC' Escherichia coli O157:H7
P33388 8.17e-93 313 30 21 787 3 sefC Outer membrane usher protein SefC Salmonella enteritidis
P33410 1.83e-90 308 28 20 807 3 fimC Outer membrane usher protein FimC Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
P33341 1.59e-83 288 28 20 797 2 yehB Outer membrane usher protein YehB Escherichia coli (strain K12)
P75750 1.37e-79 277 27 23 836 3 ybgQ Uncharacterized outer membrane usher protein YbgQ Escherichia coli (strain K12)
P07110 7.12e-74 261 26 26 849 1 papC Outer membrane usher protein PapC Escherichia coli
P76655 1.2e-71 255 28 25 807 5 yqiG Putative outer membrane usher protein YqiG Escherichia coli (strain K12)
P53512 8.42e-71 253 28 26 799 3 cssD Outer membrane usher protein CssD Escherichia coli
P15484 5.01e-70 252 30 18 685 3 None Outer membrane usher protein CS3-2 Escherichia coli
P53514 2.38e-68 246 26 32 887 3 pmfC Outer membrane usher protein PmfC Proteus mirabilis (strain HI4320)
P53513 1.54e-67 243 29 26 804 3 cssD Outer membrane usher protein CssD Escherichia coli
P77196 8.64e-67 242 27 27 854 5 yfcU Putative outer membrane usher protein YfcU Escherichia coli (strain K12)
P37868 1.29e-57 215 27 26 790 3 pefC Outer membrane usher protein PefC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q8X5K7 6.33e-51 186 30 8 372 2 lpfC Probable outer membrane usher protein LpfC Escherichia coli O157:H7
P06970 4.01e-45 178 26 27 746 3 faeD Outer membrane usher protein FaeD Escherichia coli
P12050 5.94e-44 174 25 26 752 3 fanD Outer membrane usher protein FanD Escherichia coli
Q7DBJ9 2.27e-38 150 29 10 368 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli O157:H7
P76137 6.23e-37 146 29 9 368 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli (strain K12)
P45420 2.78e-33 141 25 33 773 3 yhcD Uncharacterized outer membrane usher protein YhcD Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS12525
Feature type CDS
Gene -
Product fimbria/pilus outer membrane usher protein
Location 2776918 - 2779461 (strand: -1)
Length 2544 (nucleotides) / 847 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_136
Orthogroup size 11
N. genomes 1

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Genomic region

Domains

PF00577 Outer membrane usher protein
PF13953 PapC C-terminal domain
PF13954 PapC N-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3188 Cell motility (N)
Extracellular structures (W)		 NW Outer membrane usher protein FimD/PapC

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07347 outer membrane usher protein Two-component system
Pertussis		 -

Protein Sequence

MKPMLHKILCINLCVLSVAMPKIALSDNYFDPNLLLNNNDNIDLSNFSKEDYIAPGDYSLSVFVNTEPLGEKTILFKANKEGKVVPVVTIKDLKLFGVNVSAISKLSDLPEDTEIDNIEAYIPNSRLTFNINKLTLNASFPQVNMDKSFQGEIPAELLDDGVSAVILNYMANFIKNRTTGDYSSHNNNFFLNLNGGVNIGPWRLRTNYSYNNSSGSDQRSSSDSEFSNTYVMRNIAYLKSMLKIGEITTGGNIFSSIPIKGISLATNQQMLPSSMRGYAPVVRGFANSNATVTIRQNGQIIYKSFVAPGNFIINDISAGGIGGDLEITIEEEDGSKRVYTQAYSSLPIMLREGQFEYEFSAGQYDGGITTDSKKSKFALGTFSYGINNSITAYGGLLIANGYTSGVIGSGVSLGLLGALSADVTLARANLDKTYHGQSYRVRYSKSLLSTGTSFDLTALRYSTKDYYDFSDYNNSGYELREGIAPWLSQRQKSSFQTSISQSLGKYGSMYLRGETSRYWGNSRVNNSVTLGYNTVLKGIAFNIDYSISRLKSDDNTWPENRQINFNMNMPLSVFSNASGLQNMNASYLLTHSNDGRTSQQAGLNGSAFDNQLSYGIYQNTDNKADSYSGNMNMSYSGSKGTLSGGYSYGKNRNSFNGSLIGGVVLHSKGVTLSRMLGDSIAIVSADKAKGAEINGNVKIDTFGNAIVPQLSPYDTNSISVNVSTLPDDVTLNETSMKVYPTEGAILARQFQTKVGYQVIFDIKTAENIAIPFGAMASLTDEKDKQVNTGIIDAYQSLYMSGLPNDGNVVVTWNNNTGKHSCQFSYSELEKIEVSQQNPIRMVTVNCQ

Flanking regions ( +/- flanking 50bp)

ATATTAACTTAACAATAATTCTTATTTATGGGTGGTCTTTGGGGTGGTTTATGAAACCTATGTTGCATAAAATTCTTTGTATCAATCTTTGTGTTTTATCTGTGGCAATGCCGAAAATCGCATTGTCTGATAATTACTTTGATCCGAATCTTTTACTAAATAATAACGACAATATTGATTTAAGTAATTTCAGCAAAGAAGACTACATTGCACCAGGAGACTATAGTTTAAGCGTTTTTGTTAATACTGAGCCATTAGGTGAAAAGACAATTTTATTTAAAGCAAACAAAGAAGGTAAAGTTGTCCCAGTTGTTACAATCAAAGATTTGAAGCTATTTGGGGTTAATGTTTCAGCGATAAGTAAGCTAAGTGATCTACCCGAAGATACAGAAATTGATAATATAGAAGCGTATATTCCTAATTCAAGGCTAACCTTTAATATTAATAAATTAACATTAAATGCATCTTTTCCCCAAGTTAATATGGATAAGAGCTTTCAAGGTGAAATTCCCGCAGAATTATTAGATGATGGCGTGAGTGCTGTTATCCTTAATTATATGGCTAACTTTATTAAAAATAGAACGACAGGTGATTATTCAAGCCATAATAACAACTTTTTCTTGAATCTTAATGGTGGTGTAAATATAGGCCCTTGGCGTTTAAGAACAAATTATTCTTATAATAATTCGAGTGGTTCAGATCAGCGTTCTTCAAGTGATTCTGAATTTAGTAATACCTATGTAATGCGAAATATCGCTTATTTAAAATCAATGCTGAAAATTGGTGAAATTACCACTGGAGGGAATATTTTTTCAAGTATTCCGATAAAGGGGATTTCTTTAGCCACTAACCAACAAATGTTACCAAGTAGTATGCGTGGATATGCTCCTGTGGTAAGAGGTTTTGCCAACAGCAATGCAACCGTTACCATTCGTCAAAATGGTCAAATTATCTATAAATCTTTTGTTGCTCCTGGGAATTTTATTATTAATGATATTTCCGCCGGCGGTATTGGTGGGGACCTTGAAATAACCATTGAAGAAGAAGATGGCTCTAAACGTGTATATACACAAGCCTATTCATCGCTGCCTATCATGTTGCGTGAAGGGCAATTTGAGTATGAGTTTAGTGCGGGGCAATATGATGGTGGTATCACGACAGATTCCAAAAAAAGTAAATTTGCTTTAGGAACGTTTAGTTATGGTATCAATAACTCAATCACTGCATACGGTGGTTTATTAATTGCCAATGGTTATACCTCTGGTGTTATCGGTTCGGGTGTTTCTCTTGGGTTATTAGGTGCCTTATCTGCGGACGTCACTCTCGCCAGAGCTAATTTGGATAAAACTTATCACGGTCAATCATATCGGGTTCGTTATTCTAAGAGTTTATTATCTACAGGGACTTCGTTTGATTTAACCGCATTACGTTATTCAACTAAAGATTACTATGACTTTAGTGATTACAATAACTCAGGTTATGAATTGCGAGAAGGTATTGCACCTTGGTTAAGCCAACGTCAGAAATCTAGTTTTCAAACTTCAATTTCACAATCATTAGGAAAATACGGTTCCATGTATCTTCGTGGTGAAACCAGCCGTTATTGGGGGAATAGCCGTGTTAATAATAGTGTCACATTAGGCTATAACACTGTTCTGAAAGGTATTGCATTTAATATAGATTATTCTATTTCTCGCCTAAAAAGTGATGACAATACATGGCCAGAAAATAGACAAATTAATTTTAATATGAATATGCCACTGAGTGTGTTCTCAAATGCAAGTGGCTTGCAAAATATGAATGCAAGCTATCTTCTGACACATAGCAATGATGGAAGAACTTCGCAACAAGCCGGTTTAAATGGCTCTGCATTTGATAATCAACTCTCTTATGGTATCTACCAGAATACAGATAACAAGGCAGATAGTTATAGTGGCAATATGAATATGAGTTATTCAGGAAGTAAAGGAACGCTTTCTGGGGGTTATAGCTATGGGAAAAATAGAAATAGCTTTAATGGTAGCCTTATTGGTGGTGTTGTTCTGCACTCAAAAGGAGTGACATTATCAAGGATGTTAGGTGACAGTATTGCCATAGTGAGCGCAGATAAAGCAAAGGGCGCAGAAATCAATGGAAATGTGAAAATAGATACATTTGGTAATGCCATTGTCCCTCAATTAAGTCCTTATGATACAAACAGTATTAGCGTAAATGTCAGCACATTACCTGATGATGTGACACTTAATGAAACGTCAATGAAAGTCTATCCAACCGAAGGGGCTATTTTAGCAAGACAATTTCAAACTAAAGTGGGTTATCAGGTTATTTTTGATATAAAAACAGCGGAAAATATAGCGATACCTTTTGGTGCAATGGCTTCTTTGACAGATGAAAAAGATAAACAGGTAAATACCGGTATTATTGATGCCTATCAATCTCTTTATATGAGTGGGTTACCCAATGATGGGAATGTCGTGGTGACTTGGAATAACAATACGGGCAAACATTCATGTCAATTTAGTTATTCAGAGCTTGAAAAGATTGAAGTATCACAACAAAACCCAATAAGAATGGTGACCGTTAATTGTCAATAATTTTTATAATTATTAAGTTAAACAAGGTGATAACCAGCAATGCTGTTATG