Orthogroup:group_136


Homologs in group_136

Help

11 homologs were identified in 1 genome with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
PMI_RS02640 PMI_RS02640 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS05165 PMI_RS05165 Proteus mirabilis HI4320 pefC PefC/AfrB family outer membrane usher protein
PMI_RS05725 PMI_RS05725 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS05765 PMI_RS05765 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS07095 PMI_RS07095 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS10900 PMI_RS10900 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS12525 PMI_RS12525 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS13455 PMI_RS13455 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS15280 PMI_RS15280 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS16660 PMI_RS16660 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS17130 PMI_RS17130 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein

Distribution of group_136 homologs

Help

Number of homologs in each genome (first column and blue bar chart)

Download SVG

Phylogeny of group_136 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_136

Orthogroup content: 11 members

Help

This page summarizes the annotation of all members of the orthologous group group_136.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 - 10
2 pefC 1

Product

# Product Occurence
1 fimbria/pilus outer membrane usher protein 10
2 PefC/AfrB family outer membrane usher protein 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG3188 11 NW Cell motility (N)
Extracellular structures (W)		 Outer membrane usher protein FimD/PapC

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K07347 7 outer membrane usher protein Two-component system
Pertussis		 -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00577 11 Outer membrane usher protein
PF13953 10 PapC C-terminal domain
PF13954 10 PapC N-terminal domain

Virulence factor Annotation(s)

VF gene ID Occurences Protein VF ID Category
VFG042617 1 fimbrial biogenesis outer membrane usher protein VF1235 Adherence

Annotations of the 39 SwissProt hits

Annotation Number of occurrences
F1 capsule-anchoring protein 1
Fimbrial usher domain-containing protein YdeT 2
Outer membrane usher protein AfaC 1
Outer membrane usher protein AggC 1
Outer membrane usher protein CS3-2 1
Outer membrane usher protein CssD 2
Outer membrane usher protein FaeD 1
Outer membrane usher protein FanD 1
Outer membrane usher protein FasD 1
Outer membrane usher protein FimC 1
Outer membrane usher protein FimD 2
Outer membrane usher protein FocD 1
Outer membrane usher protein HifC 3
Outer membrane usher protein HtrE 1
Outer membrane usher protein LpfC 1
Outer membrane usher protein MrkC 1
Outer membrane usher protein MyfC 1
Outer membrane usher protein PapC 1
Outer membrane usher protein PefC 1
Outer membrane usher protein PmfC 1
Outer membrane usher protein PsaC 2
Outer membrane usher protein SefC 1
Outer membrane usher protein SfmD 1
Outer membrane usher protein YehB 1
Outer membrane usher protein YraJ 1
Probable outer membrane usher protein ElfC 2
Probable outer membrane usher protein LpfC 1
Probable outer membrane usher protein LpfC' 1
Putative outer membrane usher protein YfcU 1
Putative outer membrane usher protein YqiG 1
Uncharacterized outer membrane usher protein YbgQ 1
Uncharacterized outer membrane usher protein YhcD 1

Protein length

Min length 637
Max length 873
Mean length (sd) 816.3 (65.2)
Median length 841.0

Protein length distribution