PF12911

Help to interpret the results

Three outputs have been generated:
General: this tab contains the description, occurence in the database and other information related to the selected Pfam domain PF12911
Protein list: lists the 34 occurences of the Pfam domain within the database. The table reports information on each occurence.
Profile: phylogenetic tree annotated with
- the presence of the Pfam domain of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domain has been clustered.
Orthogroups are shown in red if they are annotated with that particular Pfam domain in a given genome , in green otherwise, i.e. if there is a discrepency between orthogroup clustering and Pfam domain prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domain.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domain prediction.

Description

External link PF12911
Description N-terminal TM domain of oligopeptide transport permease C

Occurence in the database

PF12911 is associated with 34 different proteins
The 34 proteins are classified into 6 different orthogroup(s)
Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1030 FBDBKF_05285 61737 62645 -1 oppC oligopeptide ABC transporter permease OppC Morganella morganii S1
1 group_424 FBDBKF_05315 70493 71317 1 dppC ABC-type dipeptide/oligopeptide/nickel transport system, permease component Morganella morganii S1
2 group_1075 FBDBKF_05630 133612 134502 1 sapC putrescine export ABC transporter permease SapC Morganella morganii S1
3 group_2485 FBDBKF_08930 3292 4155 -1 nikC nickel ABC transporter permease subunit NikC Morganella morganii S1
4 group_2486 FBDBKF_11980 44453 45355 -1 dppC dipeptide ABC transporter permease DppC Morganella morganii S1
5 group_2485 EHELCC_10480 141949 142812 1 nikC nickel ABC transporter permease subunit NikC Morganella morganii S2
6 group_1075 EHELCC_11960 46992 47882 -1 sapC putrescine export ABC transporter permease SapC Morganella morganii S2
7 group_424 EHELCC_12275 110177 111001 -1 dppC ABC-type dipeptide/oligopeptide/nickel transport system, permease component Morganella morganii S2
8 group_1030 EHELCC_12305 118849 119757 1 oppC oligopeptide ABC transporter permease OppC Morganella morganii S2
9 group_2486 EHELCC_14325 89350 90252 1 dppC dipeptide ABC transporter permease DppC Morganella morganii S2
10 group_2485 NLDBIP_10825 120220 121083 1 nikC nickel ABC transporter permease subunit NikC Morganella morganii S4
11 group_1075 NLDBIP_12300 46947 47837 -1 sapC putrescine export ABC transporter permease SapC Morganella morganii S4
12 group_424 NLDBIP_12615 110132 110956 -1 dppC ABC-type dipeptide/oligopeptide/nickel transport system, permease component Morganella morganii S4
13 group_1030 NLDBIP_12645 118804 119712 1 oppC oligopeptide ABC transporter permease OppC Morganella morganii S4
14 group_2486 NLDBIP_15420 93287 94189 1 dppC dipeptide ABC transporter permease DppC Morganella morganii S4
15 group_2485 LHKJJB_10530 70445 71308 -1 nikC nickel ABC transporter permease subunit NikC Morganella morganii S3
16 group_1075 LHKJJB_12160 46992 47882 -1 sapC putrescine export ABC transporter permease SapC Morganella morganii S3
17 group_424 LHKJJB_12475 110177 111001 -1 dppC ABC-type dipeptide/oligopeptide/nickel transport system, permease component Morganella morganii S3
18 group_1030 LHKJJB_12505 118849 119757 1 oppC oligopeptide ABC transporter permease OppC Morganella morganii S3
19 group_2486 LHKJJB_15190 44453 45355 -1 dppC dipeptide ABC transporter permease DppC Morganella morganii S3
20 group_1075 HKOGLL_10775 46992 47882 -1 sapC putrescine export ABC transporter permease SapC Morganella morganii S5
21 group_424 HKOGLL_11090 110177 111001 -1 dppC ABC-type dipeptide/oligopeptide/nickel transport system, permease component Morganella morganii S5
22 group_1030 HKOGLL_11120 118849 119757 1 oppC oligopeptide ABC transporter permease OppC Morganella morganii S5
23 group_2485 HKOGLL_13590 3746 4609 -1 nikC nickel ABC transporter permease subunit NikC Morganella morganii S5
24 group_2486 HKOGLL_14310 31116 32018 -1 dppC dipeptide ABC transporter permease DppC Morganella morganii S5
25 group_1075 F4V73_RS03675 780457 781347 -1 sapC putrescine export ABC transporter permease SapC Morganella psychrotolerans
26 group_1030 F4V73_RS05740 1218421 1219329 -1 oppC oligopeptide ABC transporter permease OppC Morganella psychrotolerans
27 group_424 F4V73_RS05770 1227296 1228120 1 ABC transporter permease Morganella psychrotolerans
28 group_4148 F4V73_RS14675 171025 171927 1 dppC dipeptide ABC transporter permease DppC Morganella psychrotolerans
29 group_1075 PMI_RS06665 1458567 1459460 1 sapC putrescine export ABC transporter permease SapC Proteus mirabilis HI4320
30 group_1030 PMI_RS07130 1556710 1557618 -1 oppC oligopeptide ABC transporter permease OppC Proteus mirabilis HI4320
31 group_424 PMI_RS07175 1570129 1570959 1 ABC transporter permease Proteus mirabilis HI4320
32 group_2486 PMI_RS14055 3120422 3121324 -1 dppC dipeptide ABC transporter permease DppC Proteus mirabilis HI4320
33 group_2485 PMI_RS14560 3228090 3228959 -1 ABC transporter permease subunit Proteus mirabilis HI4320