PF02954

Help to interpret the results

Three outputs have been generated:
General: this tab contains the description, occurence in the database and other information related to the selected Pfam domain PF02954
Protein list: lists the 53 occurences of the Pfam domain within the database. The table reports information on each occurence.
Profile: phylogenetic tree annotated with
- the presence of the Pfam domain of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domain has been clustered.
Orthogroups are shown in red if they are annotated with that particular Pfam domain in a given genome , in green otherwise, i.e. if there is a discrepency between orthogroup clustering and Pfam domain prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domain.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domain prediction.

Description

External link PF02954
Description Bacterial regulatory protein, Fis family

Occurence in the database

PF02954 is associated with 53 different proteins
The 53 proteins are classified into 8 different orthogroup(s)
Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2613 FBDBKF_02925 278648 280261 -1 prpR propionate catabolism operon regulatory protein PrpR Morganella morganii S1
1 group_828 FBDBKF_03380 77904 78200 1 fis DNA-binding transcriptional regulator Fis Morganella morganii S1
2 group_855 FBDBKF_03640 130988 132595 1 fhlA FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis domains Morganella morganii S1
3 group_1072 FBDBKF_05615 129917 130903 1 pspF phage shock protein operon transcriptional activator Morganella morganii S1
4 group_2791 FBDBKF_07775 75987 77837 1 AAA domain-containing protein Morganella morganii S1
5 group_1494 FBDBKF_09065 28763 30010 -1 atoC DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains Morganella morganii S1
6 group_68 FBDBKF_10590 79116 80501 1 atoC acetoacetate metabolism transcriptional regulator AtoC Morganella morganii S1
7 group_68 FBDBKF_12110 77057 78511 1 glnG nitrogen regulation protein NR(I) Morganella morganii S1
8 group_2613 EHELCC_03395 666468 668081 -1 prpR propionate catabolism operon regulatory protein PrpR Morganella morganii S2
9 group_855 EHELCC_06895 114508 116115 -1 fhlA FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis domains Morganella morganii S2
10 group_828 EHELCC_07155 168903 169199 -1 fis DNA-binding transcriptional regulator Fis Morganella morganii S2
11 group_1494 EHELCC_10345 116094 117341 1 atoC DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains Morganella morganii S2
12 group_1072 EHELCC_11975 50591 51577 -1 pspF phage shock protein operon transcriptional activator Morganella morganii S2
13 group_2791 EHELCC_13605 50181 52031 1 AAA domain-containing protein Morganella morganii S2
14 group_68 EHELCC_14195 56194 57648 -1 glnG nitrogen regulation protein NR(I) Morganella morganii S2
15 group_68 EHELCC_14925 79106 80491 1 atoC acetoacetate metabolism transcriptional regulator AtoC Morganella morganii S2
16 group_2613 NLDBIP_00065 12055 13668 1 prpR propionate catabolism operon regulatory protein PrpR Morganella morganii S4
17 group_855 NLDBIP_07220 114381 115988 -1 fhlA FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis domains Morganella morganii S4
18 group_828 NLDBIP_07480 168776 169072 -1 fis DNA-binding transcriptional regulator Fis Morganella morganii S4
19 group_1494 NLDBIP_10690 94365 95612 1 atoC DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains Morganella morganii S4
20 group_1072 NLDBIP_12315 50546 51532 -1 pspF phage shock protein operon transcriptional activator Morganella morganii S4
21 group_2791 NLDBIP_14050 71056 72906 1 AAA domain-containing protein Morganella morganii S4
22 group_68 NLDBIP_14755 79106 80491 1 atoC acetoacetate metabolism transcriptional regulator AtoC Morganella morganii S4
23 group_68 NLDBIP_15290 60131 61585 -1 glnG nitrogen regulation protein NR(I) Morganella morganii S4
24 group_2613 LHKJJB_01970 379017 380630 -1 prpR propionate catabolism operon regulatory protein PrpR Morganella morganii S3
25 group_855 LHKJJB_06755 78127 79734 -1 fhlA FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis domains Morganella morganii S3
26 group_828 LHKJJB_07015 132522 132818 -1 fis DNA-binding transcriptional regulator Fis Morganella morganii S3
27 group_2791 LHKJJB_08800 86843 88693 -1 AAA domain-containing protein Morganella morganii S3
28 group_1494 LHKJJB_10665 95916 97163 -1 atoC DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains Morganella morganii S3
29 group_1072 LHKJJB_12175 50591 51577 -1 pspF phage shock protein operon transcriptional activator Morganella morganii S3
30 group_68 LHKJJB_14590 61235 62620 -1 atoC acetoacetate metabolism transcriptional regulator AtoC Morganella morganii S3
31 group_68 LHKJJB_15320 77057 78511 1 glnG nitrogen regulation protein NR(I) Morganella morganii S3
32 group_2613 HKOGLL_02010 384528 386141 -1 prpR propionate catabolism operon regulatory protein PrpR Morganella morganii S5
33 group_828 HKOGLL_03915 100569 100865 1 fis DNA-binding transcriptional regulator Fis Morganella morganii S5
34 group_855 HKOGLL_04175 153653 155260 1 fhlA FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis domains Morganella morganii S5
35 group_2791 HKOGLL_08350 86843 88693 -1 AAA domain-containing protein Morganella morganii S5
36 group_1072 HKOGLL_10790 50591 51577 -1 pspF phage shock protein operon transcriptional activator Morganella morganii S5
37 group_68 HKOGLL_13210 61235 62620 -1 atoC acetoacetate metabolism transcriptional regulator AtoC Morganella morganii S5
38 group_1494 HKOGLL_13725 29217 30464 -1 atoC DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains Morganella morganii S5
39 group_68 HKOGLL_14440 63720 65174 1 glnG nitrogen regulation protein NR(I) Morganella morganii S5
40 group_2613 F4V73_RS05370 1138799 1140409 -1 prpR propionate catabolism operon regulatory protein PrpR Morganella psychrotolerans
41 group_1494 F4V73_RS10880 314778 316028 1 sigma-54 dependent transcriptional regulator Morganella psychrotolerans
42 group_855 F4V73_RS11225 386033 387670 -1 sigma 54-interacting transcriptional regulator Morganella psychrotolerans
43 group_828 F4V73_RS11550 460556 460852 -1 fis DNA-binding transcriptional regulator Fis Morganella psychrotolerans
44 group_2791 F4V73_RS13270 280123 282030 -1 sigma 54-interacting transcriptional regulator Morganella psychrotolerans
45 group_2748 F4V73_RS13670 369833 370939 -1 cobD threonine-phosphate decarboxylase CobD Morganella psychrotolerans
46 group_68 F4V73_RS14300 81667 83052 1 atoC acetoacetate metabolism transcriptional regulator AtoC Morganella psychrotolerans
47 group_68 F4V73_RS14530 135619 137106 -1 glnG nitrogen regulation protein NR(I) Morganella psychrotolerans
48 group_1072 PMI_RS06650 1454644 1455648 1 pspF phage shock protein operon transcriptional activator Proteus mirabilis HI4320
49 group_1494 PMI_RS11900 2627627 2628904 -1 sigma-54 dependent transcriptional regulator Proteus mirabilis HI4320
50 group_68 PMI_RS14255 3163007 3164428 1 glnG nitrogen regulation protein NR(I) Proteus mirabilis HI4320
51 group_855 PMI_RS17810 3913195 3914808 -1 sigma 54-interacting transcriptional regulator Proteus mirabilis HI4320
52 group_828 PMI_RS18020 3959637 3959933 -1 fis DNA-binding transcriptional regulator Fis Proteus mirabilis HI4320