PF00313

Help to interpret the results

Three outputs have been generated:
General: this tab contains the description, occurence in the database and other information related to the selected Pfam domain PF00313
Protein list: lists the 48 occurences of the Pfam domain within the database. The table reports information on each occurence.
Profile: phylogenetic tree annotated with
- the presence of the Pfam domain of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domain has been clustered.
Orthogroups are shown in red if they are annotated with that particular Pfam domain in a given genome , in green otherwise, i.e. if there is a discrepency between orthogroup clustering and Pfam domain prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domain.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domain prediction.

Description

External link PF00313
Description 'Cold-shock' DNA-binding domain

Occurence in the database

PF00313 is associated with 48 different proteins
The 48 proteins are classified into 13 different orthogroup(s)
Orthogroup Locus Start Stop S. Gene Product Organism
0 group_3983 FBDBKF_00180 30347 30559 -1 cspC Cold shock protein, CspA family Morganella morganii S1
1 group_399 FBDBKF_00840 153554 153766 -1 cspE transcription antiterminator/RNA stability regulator CspE Morganella morganii S1
2 group_397 FBDBKF_07055 75616 75846 -1 cspD cold shock domain-containing protein CspD Morganella morganii S1
3 group_398 FBDBKF_07185 112063 112278 1 cspC Cold shock protein, CspA family Morganella morganii S1
4 group_34 FBDBKF_10120 116294 116503 -1 cspE transcription antiterminator/RNA stability regulator CspE Morganella morganii S1
5 group_3695 FBDBKF_12480 14766 15245 -1 cspC Cold shock protein, CspA family Morganella morganii S1
6 group_3685 FBDBKF_12525 21034 21246 -1 cspC Cold shock protein, CspA family Morganella morganii S1
7 group_34 FBDBKF_16430 10383 10592 1 cspE transcription antiterminator/RNA stability regulator CspE Morganella morganii S1
8 group_399 EHELCC_00705 155102 155314 1 cspE transcription antiterminator/RNA stability regulator CspE Morganella morganii S2
9 group_4192 EHELCC_01365 278309 278521 1 cspC Cold shock protein, CspA family Morganella morganii S2
10 group_398 EHELCC_03785 73908 74123 -1 cspC Cold shock protein, CspA family Morganella morganii S2
11 group_397 EHELCC_03915 110340 110570 1 cspD cold shock domain-containing protein CspD Morganella morganii S2
12 group_34 EHELCC_04920 308259 308468 -1 cspE transcription antiterminator/RNA stability regulator CspE Morganella morganii S2
13 group_34 EHELCC_08295 127369 127578 1 cspE transcription antiterminator/RNA stability regulator CspE Morganella morganii S2
14 group_4817 NLDBIP_02095 401615 401827 -1 cspC Cold shock protein, CspA family Morganella morganii S4
15 group_399 NLDBIP_02755 524822 525034 -1 cspE transcription antiterminator/RNA stability regulator CspE Morganella morganii S4
16 group_398 NLDBIP_03785 73704 73919 -1 cspC Cold shock protein, CspA family Morganella morganii S4
17 group_397 NLDBIP_03915 110136 110366 1 cspD cold shock domain-containing protein CspD Morganella morganii S4
18 group_34 NLDBIP_04920 308055 308264 -1 cspE transcription antiterminator/RNA stability regulator CspE Morganella morganii S4
19 group_34 NLDBIP_08620 127369 127578 1 cspE transcription antiterminator/RNA stability regulator CspE Morganella morganii S4
20 group_3920 LHKJJB_03610 8856 9068 -1 cspC Cold shock protein, CspA family Morganella morganii S3
21 group_399 LHKJJB_04270 132063 132275 -1 cspE transcription antiterminator/RNA stability regulator CspE Morganella morganii S3
22 group_34 LHKJJB_05645 129581 129790 -1 cspE transcription antiterminator/RNA stability regulator CspE Morganella morganii S3
23 group_398 LHKJJB_09615 73818 74033 -1 cspC Cold shock protein, CspA family Morganella morganii S3
24 group_397 LHKJJB_09745 110250 110480 1 cspD cold shock domain-containing protein CspD Morganella morganii S3
25 group_34 LHKJJB_13710 27114 27323 1 cspE transcription antiterminator/RNA stability regulator CspE Morganella morganii S3
26 group_399 HKOGLL_02775 155307 155519 1 cspE transcription antiterminator/RNA stability regulator CspE Morganella morganii S5
27 group_4113 HKOGLL_03435 278514 278726 1 cspC Cold shock protein, CspA family Morganella morganii S5
28 group_34 HKOGLL_05270 111960 112169 1 cspE transcription antiterminator/RNA stability regulator CspE Morganella morganii S5
29 group_397 HKOGLL_09230 80572 80802 -1 cspD cold shock domain-containing protein CspD Morganella morganii S5
30 group_398 HKOGLL_09360 117019 117234 1 cspC Cold shock protein, CspA family Morganella morganii S5
31 group_34 HKOGLL_12825 117075 117284 -1 cspE transcription antiterminator/RNA stability regulator CspE Morganella morganii S5
32 group_34 F4V73_RS00215 54846 55055 1 cspE transcription antiterminator/RNA stability regulator CspE Morganella psychrotolerans
33 group_397 F4V73_RS01240 263444 263671 -1 cspD cold shock domain-containing protein CspD Morganella psychrotolerans
34 group_398 F4V73_RS01370 300329 300544 1 cold shock domain-containing protein Morganella psychrotolerans
35 group_34 F4V73_RS02950 625728 625937 1 cspE transcription antiterminator/RNA stability regulator CspE Morganella psychrotolerans
36 group_399 F4V73_RS06830 1418483 1418695 -1 cspE transcription antiterminator/RNA stability regulator CspE Morganella psychrotolerans
37 group_3730 F4V73_RS07335 1531285 1531497 -1 cspA RNA chaperone/antiterminator CspA Morganella psychrotolerans
38 group_3685 F4V73_RS07755 1620151 1620363 -1 cold-shock protein Morganella psychrotolerans
39 group_3695 F4V73_RS12560 106027 106509 -1 cold shock domain-containing protein Morganella psychrotolerans
40 group_34 PMI_RS02060 486347 486556 1 cspE transcription antiterminator/RNA stability regulator CspE Proteus mirabilis HI4320
41 group_397 PMI_RS03385 748339 748548 -1 cspD cold shock domain-containing protein CspD Proteus mirabilis HI4320
42 group_398 PMI_RS03540 791810 792025 1 cold shock domain-containing protein Proteus mirabilis HI4320
43 group_4215 PMI_RS03965 893546 893758 1 cold-shock protein Proteus mirabilis HI4320
44 group_3730 PMI_RS04480 996178 996390 1 cold-shock protein Proteus mirabilis HI4320
45 group_3685 PMI_RS04745 1045600 1045812 1 cspA RNA chaperone/antiterminator CspA Proteus mirabilis HI4320
46 group_399 PMI_RS08180 1789840 1790052 -1 cspE transcription antiterminator/RNA stability regulator CspE Proteus mirabilis HI4320
47 group_3695 PMI_RS14755 3273903 3274379 -1 cold shock domain-containing protein Proteus mirabilis HI4320