Orthogroup:group_34


Homologs in group_34

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15 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_13325 FBDBKF_13325 Morganella morganii S1 araC AraC-type DNA-binding domain and AraC-containing proteins
EHELCC_08770 EHELCC_08770 Morganella morganii S2 araC AraC-type DNA-binding domain and AraC-containing proteins
NLDBIP_09095 NLDBIP_09095 Morganella morganii S4 araC AraC-type DNA-binding domain and AraC-containing proteins
LHKJJB_05170 LHKJJB_05170 Morganella morganii S3 araC AraC-type DNA-binding domain and AraC-containing proteins
HKOGLL_05745 HKOGLL_05745 Morganella morganii S5 araC AraC-type DNA-binding domain and AraC-containing proteins
F4V73_RS01705 F4V73_RS01705 Morganella psychrotolerans - AraC family transcriptional regulator
F4V73_RS03430 F4V73_RS03430 Morganella psychrotolerans - helix-turn-helix domain-containing protein
F4V73_RS04165 F4V73_RS04165 Morganella psychrotolerans - AraC family transcriptional regulator
F4V73_RS04870 F4V73_RS04870 Morganella psychrotolerans - AraC family transcriptional regulator
F4V73_RS12525 F4V73_RS12525 Morganella psychrotolerans - AraC family transcriptional regulator
F4V73_RS17025 F4V73_RS17025 Morganella psychrotolerans - helix-turn-helix domain-containing protein
PMI_RS04495 PMI_RS04495 Proteus mirabilis HI4320 - helix-turn-helix domain-containing protein
PMI_RS05115 PMI_RS05115 Proteus mirabilis HI4320 - helix-turn-helix domain-containing protein
PMI_RS14600 PMI_RS14600 Proteus mirabilis HI4320 chbR transcriptional regulator ChbR
PMI_RS18315 PMI_RS18315 Proteus mirabilis HI4320 - AraC family transcriptional regulator

Distribution of group_34 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_34 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_34

Orthogroup content: 15 members

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This page summarizes the annotation of all members of the orthologous group group_34.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 araC 5
2 - 9
3 chbR 1

Product

# Product Occurence
1 AraC-type DNA-binding domain and AraC-containing proteins 5
2 AraC family transcriptional regulator 5
3 helix-turn-helix domain-containing protein 4
4 transcriptional regulator ChbR 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG2207 15 K Transcription (K) AraC-type DNA-binding domain and AraC-containing proteins

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K03490 1 AraC family transcriptional regulator, dual regulator of chb operon - -
K12243 1 AraC family transcriptional regulator, transcriptional activator of the genes for pyochelin and ferripyochelin receptors - -
K18991 1 AraC family transcriptional regulator, activator of mtrCDE - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF02311 1 AraC-like ligand binding domain
PF07883 1 Cupin domain
PF12833 15 Helix-turn-helix domain
PF12852 1 Cupin

Annotations of the 244 SwissProt hits

Annotation Number of occurrences
987P fimbrial operon positive regulatory protein FapR 1
Arabinose operon regulatory protein 3
Bifunctional transcriptional activator/DNA repair enzyme Ada 1
Bifunctional transcriptional activator/DNA repair enzyme AdaA 1
CFA/I fimbrial subunit D 1
F1 operon positive regulatory protein 1
HTH-type transcriptional activator AarP 1
HTH-type transcriptional activator Btr 1
HTH-type transcriptional activator CsvR 1
HTH-type transcriptional activator RhaR 41
HTH-type transcriptional activator RhaS 59
HTH-type transcriptional regulator AdiY 1
HTH-type transcriptional regulator AlkR 1
HTH-type transcriptional regulator AppY 1
HTH-type transcriptional regulator ArgR 1
HTH-type transcriptional regulator CdhR 1
HTH-type transcriptional regulator ChbR 1
HTH-type transcriptional regulator ExsA 1
HTH-type transcriptional regulator GadW 4
HTH-type transcriptional regulator GadX 5
HTH-type transcriptional regulator GbdR 2
HTH-type transcriptional regulator GlxA 1
HTH-type transcriptional regulator MtrA 1
HTH-type transcriptional regulator RipA 3
HTH-type transcriptional regulator Rv1931c 1
HTH-type transcriptional regulator VqsM 1
HTH-type transcriptional regulator YdeO 4
HTH-type transcriptional regulator YesS 1
Histidine kinase P4 1
Lactose operon transcription activator 1
Melibiose operon regulatory protein 2
MmsAB operon regulatory protein 1
Msm operon regulatory protein 1
Multiple antibiotic resistance protein MarA 6
Ornithine utilization regulator 1
Porin thermoregulatory protein EnvY 1
Probable HTH-type transcriptional regulator STM3175 1
Probable transcription factor PqrA 1
Probable transcriptional regulator LumQ 1
Putative AraC-like transcription regulator 2
Putative HTH-type transcriptional regulator YkgA 1
RCS-specific HTH-type transcriptional activator RclR 1
Raffinose operon transcriptional regulatory protein RafR 1
Regulatory protein PchR 1
Regulatory protein PocR 1
Regulatory protein Rns 1
Regulatory protein SoxS 4
Right origin-binding protein 3
TCP pilus virulence regulatory protein 2
Thermoregulatory protein LcrF 1
Transcriptional activator AggR 1
Transcriptional activator FeaR 1
Transcriptional activator NphR 1
Transcriptional activator PerA 1
Transcriptional activator RamA 2
Transcriptional activator RhrA 1
Transcriptional regulator HilD 2
Transcriptional regulator RamA 2
Transcriptional regulator Rob 1
Transcriptional regulator SirC 2
Transcriptional regulator sirC 1
Transcriptional regulatory protein HptR 8
Transposon Tn10 TetD protein 1
Uncharacterized HTH-type transcriptional regulator 1
Uncharacterized HTH-type transcriptional regulator HI_1052 1
Uncharacterized HTH-type transcriptional regulator MT1440 1
Uncharacterized HTH-type transcriptional regulator MW0077 1
Uncharacterized HTH-type transcriptional regulator Mb1430 1
Uncharacterized HTH-type transcriptional regulator Rv1395 1
Uncharacterized HTH-type transcriptional regulator SA0097 1
Uncharacterized HTH-type transcriptional regulator SACOL0084 1
Uncharacterized HTH-type transcriptional regulator SAR0107 1
Uncharacterized HTH-type transcriptional regulator SAS0078 1
Uncharacterized HTH-type transcriptional regulator SAV0101 1
Uncharacterized HTH-type transcriptional regulator YbcM 1
Uncharacterized HTH-type transcriptional regulator YbfI 1
Uncharacterized HTH-type transcriptional regulator YbfP 1
Uncharacterized HTH-type transcriptional regulator YdeC 1
Uncharacterized HTH-type transcriptional regulator YdeE 1
Uncharacterized HTH-type transcriptional regulator YdiP 1
Uncharacterized HTH-type transcriptional regulator YfiF 1
Uncharacterized HTH-type transcriptional regulator YidL 1
Uncharacterized HTH-type transcriptional regulator YijO 1
Uncharacterized HTH-type transcriptional regulator YisR 1
Uncharacterized HTH-type transcriptional regulator YobQ 1
Uncharacterized HTH-type transcriptional regulator YpdC 1
Uncharacterized HTH-type transcriptional regulator YqhC 1
Uncharacterized HTH-type transcriptional regulator YtdP 1
Uncharacterized HTH-type transcriptional regulator in cgkA 5'region (Fragment) 1
Uncharacterized response regulatory protein SERP2406 1
Uncharacterized response regulatory protein SE_0165 1
Uncharacterized transcriptional regulatory protein YesN 1
Urease operon transcriptional activator 2
Virulence regulon transcriptional activator VirF 5
XylDLEGF operon transcriptional activator 1
XylDLEGF operon transcriptional activator 1 1
XylDLEGF operon transcriptional activator 2 1
XylDLEGF operon transcriptional activator 3 1
Xylose operon regulatory protein 4

Protein length

Min length 119
Max length 308
Mean length (sd) 187.0 (83.0)
Median length 122.0

Protein length distribution