Homologs in group_3700

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2 homologs were identified in 2 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_12480 FBDBKF_12480 71.3 Morganella morganii S1 cspC Cold shock protein, CspA family
F4V73_RS12560 F4V73_RS12560 73.4 Morganella psychrotolerans - cold shock domain-containing protein

Distribution of the homologs in the orthogroup group_3700

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3700

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0A105 7.59e-05 42 39 3 64 3 capB Cold shock protein CapB Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000)
P0A106 7.59e-05 42 39 3 64 1 capB Cold shock protein CapB Pseudomonas fragi
P95459 0.000485 40 36 3 66 2 cspA Major cold shock protein CspA Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P72366 0.000811 39 40 4 66 3 cspA Cold shock-like protein CspA Stigmatella aurantiaca (strain DW4/3-1)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS14755
Feature type CDS
Gene -
Product cold shock domain-containing protein
Location 3273903 - 3274379 (strand: -1)
Length 477 (nucleotides) / 158 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_3700
Orthogroup size 3
N. genomes 3

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Genomic region

Domains

PF00313 'Cold-shock' DNA-binding domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1278 Transcription (K) K Cold shock protein, CspA family

Protein Sequence

MNGTITKWFEDKGFGFIKDENGDNRYFHVIKVANPDLIKKDAIVTFEPTTNMKGLSAYAVKVIPDSKYIFIAGERVKLTSIKSYRVYSEQVPVKTHIDKENTILSVGMLMNSIKPKSESAADQTRTLKKIDIITYHGKVLTFTDDEVDIDATVKVIKA

Flanking regions ( +/- flanking 50bp)

TACTGCATAGAGAAAATTGAGTAATAATGATCATGTAGGCGGTAATGGCAATGAATGGAACAATCACAAAATGGTTTGAAGATAAAGGTTTTGGATTTATCAAAGATGAAAATGGGGATAATCGCTATTTTCATGTGATTAAGGTTGCCAACCCTGATCTTATTAAAAAAGATGCAATAGTCACGTTTGAACCCACGACCAATATGAAGGGGTTATCAGCCTATGCAGTAAAAGTGATCCCAGACAGTAAATATATCTTTATTGCCGGAGAGCGCGTTAAGTTAACGTCAATTAAGTCTTATCGTGTTTATAGCGAACAAGTACCCGTTAAAACGCATATTGATAAAGAAAATACAATATTATCGGTTGGTATGCTAATGAACAGTATTAAGCCTAAATCTGAGTCGGCAGCAGATCAAACGCGTACTTTGAAAAAAATTGATATCATTACTTATCACGGCAAAGTATTAACCTTTACTGATGATGAAGTCGATATTGATGCAACAGTCAAAGTGATTAAGGCTTAATTGAGATAATGCGCATCTGTTTTTAACTCAATAGTGCAATGGATCACCTT