Orthogroup:group_3685


Homologs in group_3685

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4 homologs were identified in 1 genome with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
F4V73_RS00075 F4V73_RS00075 Morganella psychrotolerans tssF type VI secretion system baseplate subunit TssF
F4V73_RS07005 F4V73_RS07005 Morganella psychrotolerans - type VI secretion system baseplate subunit TssF
F4V73_RS09395 F4V73_RS09395 Morganella psychrotolerans tssF type VI secretion system baseplate subunit TssF
F4V73_RS16745 F4V73_RS16745 Morganella psychrotolerans tssF type VI secretion system baseplate subunit TssF

Distribution of group_3685 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_3685 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_3685

Orthogroup content: 4 members

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This page summarizes the annotation of all members of the orthologous group group_3685.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 tssF 3
2 - 1

Product

# Product Occurence
1 type VI secretion system baseplate subunit TssF 4

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG3519 4 U Intracellular trafficking, secretion, and vesicular transport (U) Type VI protein secretion system component VasA

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K11896 3 type VI secretion system protein ImpG - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF05947 4 Type VI secretion system, TssF

Virulence factor Annotation(s)

VF gene ID Occurences Protein VF ID Category
VFG035273 1 type VI secretion system baseplate subunit TssF VF1120 Effector delivery system
VFG041076 1 type VI secretion system baseplate subunit TssF VF1036 Effector delivery system
VFG041206 1 type VI secretion system baseplate subunit TssF VF1263 Effector delivery system

Annotations of the 1 SwissProt hits

Annotation Number of occurrences
Type VI secretion system component TssF1 1

Protein length

Min length 582
Max length 625
Mean length (sd) 602.2 (21.0)
Median length 601.0

Protein length distribution