Homologs in group_1212

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_07055 FBDBKF_07055 89.3 Morganella morganii S1 cspD cold shock domain-containing protein CspD
EHELCC_03915 EHELCC_03915 89.3 Morganella morganii S2 cspD cold shock domain-containing protein CspD
NLDBIP_03915 NLDBIP_03915 89.3 Morganella morganii S4 cspD cold shock domain-containing protein CspD
LHKJJB_09745 LHKJJB_09745 89.3 Morganella morganii S3 cspD cold shock domain-containing protein CspD
HKOGLL_09230 HKOGLL_09230 89.3 Morganella morganii S5 cspD cold shock domain-containing protein CspD
PMI_RS03385 PMI_RS03385 72.5 Proteus mirabilis HI4320 cspD cold shock domain-containing protein CspD

Distribution of the homologs in the orthogroup group_1212

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_1212

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0A971 5.2e-36 119 79 0 67 3 cspD Cold shock-like protein CspD Shigella flexneri
P0A968 5.2e-36 119 79 0 67 1 cspD Cold shock-like protein CspD Escherichia coli (strain K12)
P0A969 5.2e-36 119 79 0 67 3 cspD Cold shock-like protein CspD Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0A970 5.2e-36 119 79 0 67 3 cspD Cold shock-like protein CspD Escherichia coli O157:H7
Q9KSW4 1.57e-32 110 71 0 67 3 cspD Cold shock-like protein CspD Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
P46449 3.54e-26 94 59 0 69 3 cspD Cold shock-like protein CspD Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P72366 1.58e-25 92 58 0 67 3 cspA Cold shock-like protein CspA Stigmatella aurantiaca (strain DW4/3-1)
P48859 8.64e-22 82 55 0 67 2 scoF Cold shock protein ScoF Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
P72188 5.76e-21 80 53 0 60 2 capA Cold shock protein CapA (Fragment) Pseudomonas fragi
P0A105 3.43e-20 79 50 1 66 3 capB Cold shock protein CapB Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000)
P0A106 3.43e-20 79 50 1 66 1 capB Cold shock protein CapB Pseudomonas fragi
Q9S170 3.52e-20 79 49 0 65 2 cspG Cold shock-like protein CspG Shewanella violacea (strain JCM 10179 / CIP 106290 / LMG 19151 / DSS12)
P0A352 5.28e-20 78 50 0 64 3 cspA Cold shock-like protein CspA Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
P0A354 5.28e-20 78 50 0 64 3 cspA Cold shock-like protein CspA Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253)
P0A353 5.28e-20 78 50 0 64 3 cspA Cold shock-like protein CspA Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50)
Q9S1B7 1.33e-19 77 50 0 65 2 cspA Cold shock-like protein CspA Shewanella violacea (strain JCM 10179 / CIP 106290 / LMG 19151 / DSS12)
P39158 1.64e-19 77 49 1 67 1 cspC Cold shock protein CspC Bacillus subtilis (strain 168)
Q01761 4.71e-19 75 56 1 64 1 SC7.0 Cold shock-like protein 7.0 Streptomyces clavuligerus
Q816H3 8.06e-19 75 50 1 66 3 cspD Cold shock-like protein CspD Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711)
Q81K90 8.06e-19 75 50 1 66 3 cspD Cold shock-like protein CspD Bacillus anthracis
O30875 9.85e-19 75 44 0 67 3 cspA Major cold shock protein Micrococcus luteus (strain ATCC 4698 / DSM 20030 / JCM 1464 / CCM 169 / CCUG 5858 / IAM 1056 / NBRC 3333 / NCIMB 9278 / NCTC 2665 / VKM Ac-2230)
P0A975 1.46e-18 74 54 0 55 3 cspE Cold shock-like protein CspE Shigella flexneri
E0J1Q3 1.46e-18 74 54 0 55 1 cspE Cold shock-like protein CspE Escherichia coli (strain ATCC 9637 / CCM 2024 / DSM 1116 / LMG 11080 / NBRC 13500 / NCIMB 8666 / NRRL B-766 / W)
P0A972 1.46e-18 74 54 0 55 1 cspE Cold shock-like protein CspE Escherichia coli (strain K12)
P0A973 1.46e-18 74 54 0 55 3 cspE Cold shock-like protein CspE Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0A974 1.46e-18 74 54 0 55 3 cspE Cold shock-like protein CspE Escherichia coli O157:H7
Q89A90 2.11e-18 74 54 0 55 3 cspE Cold shock-like protein CspE Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
P63238 2.36e-18 74 54 0 55 3 cspE Cold shock-like protein CspE Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
P63237 2.36e-18 74 54 0 55 3 cspE Cold shock-like protein CspE Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
A0R5E1 2.85e-18 73 55 0 58 1 cspA Probable cold shock protein A Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)
P0A357 3.04e-18 73 47 1 67 3 cspLB Cold shock-like protein CspLB Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
P0A358 3.04e-18 73 47 1 67 3 cspLB Cold shock-like protein CspLB Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262)
P51777 4.86e-18 73 46 1 67 1 cspD Cold shock protein CspD Bacillus subtilis (strain 168)
Q9KL16 6.85e-18 73 46 0 65 2 cspV Cold shock protein CspV Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
P9WP75 8.35e-18 72 55 0 58 1 cspA Probable cold shock protein A Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WP74 8.35e-18 72 55 0 58 3 cspA Probable cold shock protein A Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P63849 8.35e-18 72 55 0 58 3 cspA Probable cold shock protein A Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
P36995 8.75e-18 72 58 0 56 1 cspB Cold shock-like protein CspB Escherichia coli (strain K12)
Q45099 8.88e-18 72 48 1 66 1 cspD Cold shock-like protein CspD Bacillus cereus
P95459 9.91e-18 72 48 1 66 2 cspA Major cold shock protein CspA Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P96349 1.02e-17 72 51 1 66 2 cspL Cold shock protein 2 Lactiplantibacillus plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1)
P0A9Y4 1.17e-17 72 50 0 65 3 cspA Cold shock protein CspA Shigella flexneri
P0A9Y2 1.17e-17 72 50 0 65 3 cspA Cold shock protein CspA Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A9Y3 1.17e-17 72 50 0 65 3 cspA Cold shock protein CspA Salmonella typhi
P0A9Y5 1.17e-17 72 50 0 65 3 cspA Cold shock protein CspA Salmonella enteritidis
Q46664 1.17e-17 72 50 0 65 3 cspA Major cold shock protein Klebsiella aerogenes (strain ATCC 13048 / DSM 30053 / CCUG 1429 / JCM 1235 / KCTC 2190 / NBRC 13534 / NCIMB 10102 / NCTC 10006 / CDC 819-56)
P0A9X9 1.17e-17 72 50 0 65 1 cspA Cold shock protein CspA Escherichia coli (strain K12)
P0A9Y0 1.17e-17 72 50 0 65 3 cspA Cold shock protein CspA Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0A9Y1 1.17e-17 72 50 0 65 3 cspA Cold shock protein CspA Escherichia coli O157:H7
P0DA49 1.24e-17 72 48 1 68 3 cspA Major cold shock protein Streptococcus pyogenes serotype M3 (strain SSI-1)
P0A361 1.24e-17 72 48 1 68 3 cspA Major cold shock protein Streptococcus pyogenes serotype M18 (strain MGAS8232)
P0DA48 1.24e-17 72 48 1 68 3 cspA Major cold shock protein Streptococcus pyogenes serotype M3 (strain ATCC BAA-595 / MGAS315)
P0C0F1 1.24e-17 72 48 1 68 3 cspA Major cold shock protein Streptococcus pyogenes serotype M1
Q45097 1.33e-17 72 47 1 65 4 cspB Cold shock-like protein CspB Bacillus cereus
Q9KN00 1.94e-17 72 44 0 65 3 cspA Cold shock-like protein CspA Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q5X9L4 2.12e-17 71 48 1 68 3 cspA Major cold shock protein Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394)
P57407 2.13e-17 71 54 0 55 3 cspC Cold shock-like protein CspC Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
P0A355 2.33e-17 71 55 1 58 1 cspLA Cold shock-like protein CspLA Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
P0A356 2.33e-17 71 55 1 58 3 cspLA Cold shock-like protein CspLA Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262)
P0CL01 2.44e-17 71 53 0 56 3 cspJ Cold shock-like protein CspJ Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
E1WGN1 2.44e-17 71 53 0 56 2 cspJ Cold shock-like protein CspJ Salmonella typhimurium (strain SL1344)
P58726 2.72e-17 71 53 0 56 3 cspJ Cold shock-like protein CspJ Salmonella typhi
P0A9Y9 5.24e-17 70 46 0 64 3 cspC Cold shock-like protein CspC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A9Z0 5.24e-17 70 46 0 64 3 cspC Cold shock-like protein CspC Salmonella typhi
E0J500 5.24e-17 70 46 0 64 1 cspC Cold shock-like protein CspC Escherichia coli (strain ATCC 9637 / CCM 2024 / DSM 1116 / LMG 11080 / NBRC 13500 / NCIMB 8666 / NRRL B-766 / W)
P0A9Y6 5.24e-17 70 46 0 64 1 cspC Cold shock-like protein CspC Escherichia coli (strain K12)
P0A9Y7 5.24e-17 70 46 0 64 3 cspC Cold shock-like protein CspC Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0A9Y8 5.24e-17 70 46 0 64 3 cspC Cold shock-like protein CspC Escherichia coli O157:H7
P62171 9.76e-17 70 46 1 65 3 cspC Cold shock-like protein CspC Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711)
P62170 9.76e-17 70 46 1 65 4 cspC Cold shock-like protein CspC Bacillus cereus
P62169 9.76e-17 70 46 1 65 3 cspC Cold shock-like protein CspC Bacillus anthracis
P71478 1.02e-16 70 46 1 66 2 csp Cold shock protein 1 Lactiplantibacillus plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1)
P72192 1.04e-16 69 50 1 60 2 tapB Temperature acclimation protein B (Fragment) Pseudomonas fragi
Q83RI9 1.64e-16 69 46 0 64 3 cspC Cold shock-like protein CspC Shigella flexneri
O67327 2.57e-16 68 46 1 64 3 csp Cold shock-like protein Aquifex aeolicus (strain VF5)
P55390 2.59e-16 68 52 0 57 4 NGR_a00060 Probable cold shock protein y4cH Sinorhizobium fredii (strain NBRC 101917 / NGR234)
Q9Z3S6 3.72e-16 68 52 0 57 2 cspA Cold shock protein CspA Rhizobium meliloti (strain 1021)
P32081 5.73e-16 68 45 1 68 1 cspB Cold shock protein CspB Bacillus subtilis (strain 168)
P41016 6.3e-16 67 48 1 58 1 cspB Cold shock protein CspB Bacillus caldolyticus
Q81GQ6 6.75e-16 67 52 2 57 3 cspA Major cold shock protein CspA Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711)
Q81TW8 6.75e-16 67 52 2 57 3 cspA Major cold shock protein CspA Bacillus anthracis
P0A986 8.58e-16 67 51 0 56 3 cspI Cold shock-like protein CspI Escherichia coli (strain K12)
P0A987 8.58e-16 67 51 0 56 3 cspI Cold shock-like protein CspI Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q4L6A7 9.15e-16 67 50 1 58 3 cspA Cold shock protein CspA Staphylococcus haemolyticus (strain JCSC1435)
Q7A0X3 1.01e-15 67 50 1 58 3 cspA Cold shock protein CspA Staphylococcus aureus (strain MW2)
Q6G9F9 1.01e-15 67 50 1 58 3 cspA Cold shock protein CspA Staphylococcus aureus (strain MSSA476)
Q6GH06 1.01e-15 67 50 1 58 3 cspA Cold shock protein CspA Staphylococcus aureus (strain MRSA252)
Q7A5P3 1.01e-15 67 50 1 58 3 cspA Cold shock protein CspA Staphylococcus aureus (strain N315)
Q7A2R8 1.01e-15 67 50 1 58 3 cspA Cold shock protein CspA Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q5HG18 1.01e-15 67 50 1 58 1 cspA Cold shock protein CspA Staphylococcus aureus (strain COL)
Q2YY16 1.01e-15 67 50 1 58 3 cspA Cold shock protein CspA Staphylococcus aureus (strain bovine RF122 / ET3-1)
Q2FYN2 1.01e-15 67 50 1 58 1 cspA Cold shock protein CspA Staphylococcus aureus (strain NCTC 8325 / PS 47)
Q2FH36 1.01e-15 67 50 1 58 3 cspA Cold shock protein CspA Staphylococcus aureus (strain USA300)
O54310 1.23e-15 67 48 2 64 1 csp Cold shock-like protein Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
P0A981 1.26e-15 67 50 0 56 3 cspG Cold shock-like protein CspG Shigella flexneri
P0A978 1.26e-15 67 50 0 56 1 cspG Cold shock-like protein CspG Escherichia coli (strain K12)
P0A979 1.26e-15 67 50 0 56 3 cspG Cold shock-like protein CspG Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0A980 1.26e-15 67 50 0 56 3 cspG Cold shock-like protein CspG Escherichia coli O157:H7
Q45096 1.45e-15 67 52 2 57 1 cspA Major cold shock protein CspA Bacillus cereus
P42016 1.48e-15 67 46 1 58 2 cspB Cold shock protein CspB Geobacillus stearothermophilus
P54584 1.52e-15 67 46 0 67 2 csp Cold shock protein Arthrobacter globiformis
P0A362 1.83e-15 67 51 0 56 3 cspB Cold shock-like protein CspB Yersinia pestis
P0A363 1.83e-15 67 51 0 56 3 cspB Cold shock-like protein CspB Yersinia enterocolitica
Q49XK3 2.8e-15 66 48 1 58 3 cspA Cold shock protein CspA Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41)
Q8CP90 2.8e-15 66 48 1 58 3 cspA Cold shock protein CspA Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
Q5HPE0 2.8e-15 66 48 1 58 3 cspA Cold shock protein CspA Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
Q38896 5.05e-15 68 50 1 63 1 CSP4 Cold shock domain-containing protein 4 Arabidopsis thaliana
Q81QK2 2.89e-14 63 50 1 56 3 cspE Cold shock-like protein CspE Bacillus anthracis
Q9VRN5 8.28e-14 65 41 0 62 2 lin-28 Protein lin-28 homolog Drosophila melanogaster
Q81DK5 1.24e-13 62 48 1 56 3 cspE Cold shock-like protein CspE Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711)
P27484 1.57e-13 65 46 0 60 2 GRP-2 Glycine-rich protein 2 Nicotiana sylvestris
P41018 4.98e-13 60 47 1 53 3 cspB Cold shock protein CspB (Fragment) Sporosarcina globispora
P72191 4.76e-12 58 43 1 60 2 tapA Temperature acclimation protein A (Fragment) Pseudomonas fragi
Q45100 5.7e-12 57 50 1 50 1 cspE Cold shock-like protein CspE (Fragment) Bacillus cereus
Q94C69 8.65e-12 61 45 0 55 1 CSP3 Cold shock domain-containing protein 3 Arabidopsis thaliana
Q53816 1.44e-11 56 53 0 45 3 cspA Major cold shock protein (Fragment) Shigella boydii
Q56178 1.44e-11 56 53 0 45 3 cspA Major cold shock protein (Fragment) Salmonella virchow
Q46051 1.44e-11 56 53 0 45 3 cspA Major cold shock protein (Fragment) Citrobacter freundii
Q48493 7.88e-11 54 47 0 46 3 cspA Major cold shock protein (Fragment) Klebsiella pneumoniae
Q41188 9.9e-11 57 54 0 42 1 CSP2 Cold shock protein 2 Arabidopsis thaliana
Q61CX7 1.11e-10 58 48 0 47 3 lin-28 Protein lin-28 Caenorhabditis briggsae
Q51929 1.57e-10 53 48 0 45 3 cspA Major cold shock protein (Fragment) Photobacterium leiognathi subsp. mandapamensis
P92186 1.78e-10 57 48 0 47 1 lin-28 Protein lin-28 Caenorhabditis elegans
Q68W69 2.16e-10 53 44 0 52 3 cspA Cold shock-like protein CspA Rickettsia typhi (strain ATCC VR-144 / Wilmington)
Q56922 2.57e-10 53 48 0 45 3 cspA Major cold shock protein (Fragment) Yersinia enterocolitica
Q9ZCP9 2.81e-10 53 44 0 52 3 cspA Cold shock-like protein CspA Rickettsia prowazekii (strain Madrid E)
Q44078 2.84e-10 53 48 0 45 3 cspA Major cold-shock protein (Fragment) Aeromonas hydrophila
Q52287 3.94e-10 52 46 0 45 3 cspA Major cold shock protein (Fragment) Photobacterium phosphoreum
O65639 5.44e-10 56 42 1 68 1 CSP1 Cold shock protein 1 Arabidopsis thaliana
Q44317 7.27e-10 52 46 0 45 3 cspA Major cold-shock protein (Fragment) Aeromonas salmonicida
Q53984 1.14e-09 51 46 1 45 3 cspA Major cold shock protein (Fragment) Streptococcus dysgalactiae
P91599 1.28e-09 55 46 0 47 2 lin-28 Protein lin-28 Caenorhabditis remanei
Q4UMU5 1.47e-09 52 44 0 49 3 cspA Cold shock-like protein CspA Rickettsia felis (strain ATCC VR-1525 / URRWXCal2)
Q92GV1 1.51e-09 52 44 0 49 3 cspA Cold shock-like protein CspA Rickettsia conorii (strain ATCC VR-613 / Malish 7)
P0C0F0 2.15e-09 50 46 1 45 3 cspA Major cold shock protein (Fragment) Streptococcus pyogenes
Q1RHK6 8.36e-09 50 46 0 49 3 cspA Cold shock-like protein CspA Rickettsia bellii (strain RML369-C)
Q45KJ5 1.06e-08 52 37 1 70 2 LIN28A Protein lin-28 homolog A Gallus gallus
Q5EB47 1.14e-08 52 38 2 70 2 lin28a Protein lin-28 homolog A Xenopus tropicalis
Q8JHC4 1.34e-08 52 38 2 70 2 lin28a Protein lin-28 homolog A Xenopus laevis
Q45KJ6 2.2e-08 52 40 1 70 1 Lin28b Protein lin-28 homolog B Mus musculus
Q8K3Y3 8.22e-08 50 35 1 70 1 Lin28a Protein lin-28 homolog A Mus musculus
Q9H9Z2 9.48e-08 49 35 1 70 1 LIN28A Protein lin-28 homolog A Homo sapiens
P45441 3.02e-07 48 34 1 66 1 ybx2-b Y-box-binding protein 2-B Xenopus laevis
Q8AVK2 5.78e-07 47 37 1 70 2 lin28b Protein lin-28 homolog B (Fragment) Xenopus laevis
Q6ZN17 6.74e-07 47 38 1 70 1 LIN28B Protein lin-28 homolog B Homo sapiens
Q803L0 7.11e-07 47 35 1 70 1 lin28a Protein lin-28 homolog A Danio rerio
P21574 7.21e-07 47 34 1 66 1 ybx2-a Y-box-binding protein 2-A Xenopus laevis
P62961 7.82e-07 47 34 1 66 2 Ybx1 Y-box-binding protein 1 Rattus norvegicus
P62960 7.82e-07 47 34 1 66 1 Ybx1 Y-box-binding protein 1 Mus musculus
Q45KJ4 7.9e-07 47 37 1 69 2 LIN28B Protein lin-28 homolog B Gallus gallus
P67809 8.14e-07 47 34 1 66 1 YBX1 Y-box-binding protein 1 Homo sapiens
P67808 8.14e-07 47 34 1 66 2 YBX1 Y-box-binding protein 1 Bos taurus
Q06066 8.62e-07 47 34 1 66 2 YBX1 Y-box-binding protein 1 Gallus gallus
Q28618 8.72e-07 47 34 1 66 1 YBX1 Y-box-binding protein 1 Oryctolagus cuniculus
P41824 8.81e-07 47 35 1 67 2 None Y-box factor homolog Aplysia californica
B5DE31 1.09e-06 47 34 1 66 1 ybx1 Y-box-binding protein 1 Danio rerio
P16989 1.11e-06 47 34 1 66 1 YBX3 Y-box-binding protein 3 Homo sapiens
Q00436 3.83e-06 45 34 1 66 2 None B box-binding protein Xenopus laevis
Q9JKB3 3.92e-06 45 34 1 66 1 Ybx3 Y-box-binding protein 3 Mus musculus
Q62764 4.81e-06 45 34 1 66 1 Ybx3 Y-box-binding protein 3 Rattus norvegicus
P21573 4.85e-06 45 34 1 66 2 ybx1 Y-box-binding protein 1 Xenopus laevis
Q9Y2T7 5.16e-06 45 34 1 66 1 YBX2 Y-box-binding protein 2 Homo sapiens
Q9Z2C8 1.15e-05 44 34 1 66 1 Ybx2 Y-box-binding protein 2 Mus musculus
Q9VVA0 1.9e-05 42 43 1 48 1 CG9705 Cold shock domain-containing protein CG9705 Drosophila melanogaster
Q63430 0.000157 40 39 1 53 1 Csdc2 Cold shock domain-containing protein C2 Rattus norvegicus
Q9Y534 0.000162 40 39 1 53 1 CSDC2 Cold shock domain-containing protein C2 Homo sapiens
Q91YQ3 0.00017 40 39 1 53 1 Csdc2 Cold shock domain-containing protein C2 Mus musculus

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS01240
Feature type CDS
Gene cspD
Product cold shock domain-containing protein CspD
Location 263444 - 263671 (strand: -1)
Length 228 (nucleotides) / 75 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1212
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF00313 'Cold-shock' DNA-binding domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1278 Transcription (K) K Cold shock protein, CspA family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03704 cold shock protein - -

Protein Sequence

METGTVKWFNNAKGFGFVCPSGGGDDIFVHYSTIQMDGYRTLKAGQKVNYDTTPGPKGLHVSVITPVAEDDDTSA

Flanking regions ( +/- flanking 50bp)

TGCATTGTGCAGCATTTTTCAATCGTTTGACAGATGAGGGTTATAACAGTATGGAAACGGGTACTGTTAAGTGGTTCAACAACGCCAAGGGTTTCGGGTTTGTCTGTCCCTCAGGGGGCGGTGATGATATTTTTGTTCACTACTCGACAATACAGATGGATGGCTACCGCACGCTGAAGGCCGGTCAGAAAGTGAATTATGACACCACACCGGGACCGAAAGGTCTTCACGTCAGTGTGATTACCCCGGTTGCTGAAGATGATGATACTTCTGCGTAACAGCACAGACGATCTATACCCAACGTCATTCAGGATGCAGGCAGGCGGCA