Orthogroup:group_3920


Homologs in group_3920

Help

1 homologs were identified in 1 genome with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
LHKJJB_03610 LHKJJB_03610 Morganella morganii S3 cspC Cold shock protein, CspA family

Distribution of group_3920 homologs

Help

Number of homologs in each genome (first column and blue bar chart)

Download SVG

Phylogeny of the RefSeq best hits of group_3920

Orthogroup content: 1 members

Help

This page summarizes the annotation of all members of the orthologous group group_3920.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 cspC 1

Product

# Product Occurence
1 Cold shock protein, CspA family 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1278 1 K Transcription (K) Cold shock protein, CspA family

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K03704 1 cold shock protein - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00313 1 'Cold-shock' DNA-binding domain

Annotations of the 178 SwissProt hits

Annotation Number of occurrences
B box-binding protein 1
Calcium-regulated heat stable protein 1 2
Calcium-regulated heat-stable protein 1 1
Cold shock domain-containing protein 3 1
Cold shock domain-containing protein 4 1
Cold shock domain-containing protein C2 3
Cold shock domain-containing protein CG9705 1
Cold shock protein 1
Cold shock protein 1 2
Cold shock protein 2 2
Cold shock protein CapA (Fragment) 1
Cold shock protein CapB 2
Cold shock protein CspA 21
Cold shock protein CspB 3
Cold shock protein CspB (Fragment) 1
Cold shock protein CspC 1
Cold shock protein CspD 1
Cold shock protein CspV 1
Cold shock protein ScoF 1
Cold shock-like protein 2
Cold shock-like protein 7.0 1
Cold shock-like protein CspA 11
Cold shock-like protein CspB 4
Cold shock-like protein CspC 11
Cold shock-like protein CspD 9
Cold shock-like protein CspE 10
Cold shock-like protein CspE (Fragment) 1
Cold shock-like protein CspF 2
Cold shock-like protein CspG 5
Cold shock-like protein CspH 6
Cold shock-like protein CspI 2
Cold shock-like protein CspJ 3
Cold shock-like protein CspLA 2
Cold shock-like protein CspLB 2
Glycine-rich protein 2 1
Major cold shock protein 7
Major cold shock protein (Fragment) 9
Major cold shock protein CspA 4
Major cold-shock protein (Fragment) 2
Probable cold shock protein A 4
Probable cold shock protein y4cH 1
Protein lin-28 3
Protein lin-28 homolog 1
Protein lin-28 homolog A 6
Protein lin-28 homolog B 3
Protein lin-28 homolog B (Fragment) 1
Temperature acclimation protein A (Fragment) 1
Temperature acclimation protein B (Fragment) 1
Y-box factor homolog 1
Y-box-binding protein 1 8
Y-box-binding protein 2 2
Y-box-binding protein 2-A 1
Y-box-binding protein 2-B 1
Y-box-binding protein 3 3