Orthogroup:group_397


Homologs in group_397

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_07055 FBDBKF_07055 Morganella morganii S1 cspD cold shock domain-containing protein CspD
EHELCC_03915 EHELCC_03915 Morganella morganii S2 cspD cold shock domain-containing protein CspD
NLDBIP_03915 NLDBIP_03915 Morganella morganii S4 cspD cold shock domain-containing protein CspD
LHKJJB_09745 LHKJJB_09745 Morganella morganii S3 cspD cold shock domain-containing protein CspD
HKOGLL_09230 HKOGLL_09230 Morganella morganii S5 cspD cold shock domain-containing protein CspD
F4V73_RS01240 F4V73_RS01240 Morganella psychrotolerans cspD cold shock domain-containing protein CspD
PMI_RS03385 PMI_RS03385 Proteus mirabilis HI4320 cspD cold shock domain-containing protein CspD

Distribution of group_397 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_397 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_397

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_397.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 cspD 7

Product

# Product Occurence
1 cold shock domain-containing protein CspD 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1278 7 K Transcription (K) Cold shock protein, CspA family

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K03704 7 cold shock protein - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00313 7 'Cold-shock' DNA-binding domain

Annotations of the 178 SwissProt hits

Annotation Number of occurrences
B box-binding protein 1
Calcium-regulated heat stable protein 1 2
Calcium-regulated heat-stable protein 1 1
Cold shock domain-containing protein 3 1
Cold shock domain-containing protein 4 1
Cold shock domain-containing protein C2 3
Cold shock domain-containing protein CG9705 1
Cold shock protein 1
Cold shock protein 1 2
Cold shock protein 2 2
Cold shock protein CapA (Fragment) 1
Cold shock protein CapB 2
Cold shock protein CspA 21
Cold shock protein CspB 3
Cold shock protein CspB (Fragment) 1
Cold shock protein CspC 1
Cold shock protein CspD 1
Cold shock protein CspV 1
Cold shock protein ScoF 1
Cold shock-like protein 2
Cold shock-like protein 7.0 1
Cold shock-like protein CspA 11
Cold shock-like protein CspB 4
Cold shock-like protein CspC 11
Cold shock-like protein CspD 9
Cold shock-like protein CspE 10
Cold shock-like protein CspE (Fragment) 1
Cold shock-like protein CspF 2
Cold shock-like protein CspG 5
Cold shock-like protein CspH 6
Cold shock-like protein CspI 2
Cold shock-like protein CspJ 3
Cold shock-like protein CspLA 2
Cold shock-like protein CspLB 2
Glycine-rich protein 2 1
Major cold shock protein 7
Major cold shock protein (Fragment) 9
Major cold shock protein CspA 4
Major cold-shock protein (Fragment) 2
Probable cold shock protein A 4
Probable cold shock protein y4cH 1
Protein lin-28 3
Protein lin-28 homolog 1
Protein lin-28 homolog A 6
Protein lin-28 homolog B 3
Protein lin-28 homolog B (Fragment) 1
Temperature acclimation protein A (Fragment) 1
Temperature acclimation protein B (Fragment) 1
Y-box factor homolog 1
Y-box-binding protein 1 8
Y-box-binding protein 2 2
Y-box-binding protein 2-A 1
Y-box-binding protein 2-B 1
Y-box-binding protein 3 3

Protein length

Min length 69
Max length 76
Mean length (sd) 74.9 (2.6)
Median length 76.0

Protein length distribution