Orthogroup:group_397



Homologs in group_397

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8 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_15520 FBDBKF_15520 Morganella morganii S1 pAS PAS domain
EHELCC_15880 EHELCC_15880 Morganella morganii S2 pAS PAS domain
NLDBIP_16490 NLDBIP_16490 Morganella morganii S4 pAS PAS domain
LHKJJB_16315 LHKJJB_16315 Morganella morganii S3 pAS PAS domain
HKOGLL_16085 HKOGLL_16085 Morganella morganii S5 pAS PAS domain
F4V73_RS17625 F4V73_RS17625 Morganella psychrotolerans - PAS domain-containing methyl-accepting chemotaxis protein
PMI_RS13895 PMI_RS13895 Proteus mirabilis HI4320 - PAS domain-containing methyl-accepting chemotaxis protein
PMI_RS15350 PMI_RS15350 Proteus mirabilis HI4320 - sensor domain-containing diguanylate cyclase

Distribution of group_397 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_397 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_397

Orthogroup content: 8 members

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This page summarizes the annotation of all members of the orthologous group group_397.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 pAS 5
2 - 3

Product

# Product Occurence
1 PAS domain 5
2 PAS domain-containing methyl-accepting chemotaxis protein 2
3 sensor domain-containing diguanylate cyclase 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0840 7 T Signal transduction mechanisms (T) Methyl-accepting chemotaxis protein (MCP)
COG2199 1 T Signal transduction mechanisms (T) GGDEF domain, diguanylate cyclase (c-di-GMP synthetase) or its enzymatically inactive variants

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K03776 7 aerotaxis receptor Two-component system
Bacterial chemotaxis
-

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00015 7 Methyl-accepting chemotaxis protein (MCP) signalling domain
PF00990 1 Diguanylate cyclase, GGDEF domain
PF08447 7 PAS fold
PF13426 1 PAS domain

Annotations of the 172 SwissProt hits

Annotation Number of occurrences
Aerotaxis receptor 1
Bacterioopsin transcriptional activator 1
Bifunctional diguanylate cyclase/cyclic di-GMP phosphodiesterase MucR 1
Biofilm architecture maintenance protein MbaA 1
Biofilm dispersion protein BdlA 1
Blue-light-activated protein 1
Chemoreceptor McpA 1
Chemoreceptor protein A 1
Cyclic di-GMP phosphodiesterase NbdA 1
Cyclic di-GMP phosphodiesterase PdeB 1
Cyclic di-GMP phosphodiesterase PdeR 1
Diguanylate cyclase 1
Diguanylate cyclase A 1
Diguanylate cyclase DgcM 2
Diguanylate cyclase DgcN 1
Diguanylate cyclase DgcP 3
Diguanylate cyclase DgcS 1
Diguanylate cyclase DgcZ 1
Diguanylate cyclase DosC 4
Diguanylate cyclase TpbB 2
Diguanylate cyclase VdcA 1
Frizzy aggregation protein FrzCD 1
Halobacterial transducer protein 9 1
Heme-based aerotactic transducer HemAT 2
High affinity cAMP-specific and IBMX-insensitive 3',5'-cyclic phosphodiesterase 8A 1
High affinity cAMP-specific and IBMX-insensitive 3',5'-cyclic phosphodiesterase 8B 2
Hybrid signal transduction histidine kinase L 1
Methyl-accepting chemotaxis aspartate transducer 1
Methyl-accepting chemotaxis citrate transducer 1
Methyl-accepting chemotaxis protein 1 1
Methyl-accepting chemotaxis protein 2 1
Methyl-accepting chemotaxis protein 3 1
Methyl-accepting chemotaxis protein 4 1
Methyl-accepting chemotaxis protein Aer 1
Methyl-accepting chemotaxis protein Amb0994 1
Methyl-accepting chemotaxis protein Amb2333 1
Methyl-accepting chemotaxis protein CtpH 1
Methyl-accepting chemotaxis protein CtpL 1
Methyl-accepting chemotaxis protein CtpM 1
Methyl-accepting chemotaxis protein HlyB 1
Methyl-accepting chemotaxis protein I 1
Methyl-accepting chemotaxis protein II 2
Methyl-accepting chemotaxis protein III 1
Methyl-accepting chemotaxis protein IV 1
Methyl-accepting chemotaxis protein McpA 3
Methyl-accepting chemotaxis protein McpB 2
Methyl-accepting chemotaxis protein McpC 1
Methyl-accepting chemotaxis protein McpG 1
Methyl-accepting chemotaxis protein McpH 1
Methyl-accepting chemotaxis protein McpK 1
Methyl-accepting chemotaxis protein McpN 1
Methyl-accepting chemotaxis protein McpP 1
Methyl-accepting chemotaxis protein McpQ 1
Methyl-accepting chemotaxis protein McpS 1
Methyl-accepting chemotaxis protein McpU 1
Methyl-accepting chemotaxis protein NahY 1
Methyl-accepting chemotaxis protein PcaY 2
Methyl-accepting chemotaxis protein PctA 1
Methyl-accepting chemotaxis protein PctB 1
Methyl-accepting chemotaxis protein PctC 1
Methyl-accepting chemotaxis protein PscA 1
Methyl-accepting chemotaxis protein TlpA 1
Methyl-accepting chemotaxis protein TlpB 1
Methyl-accepting chemotaxis protein TlpC 1
Methyl-accepting chemotaxis protein TlpQ 1
Methyl-accepting chemotaxis serine transducer 1
Nitrogen fixation regulatory protein 3
Oxygen sensor protein DosP 1
Phototropin-2 2
Phytochrome-like protein cph2 1
Probable chemoreceptor McpE 1
Probable chemoreceptor y4fA 1
Probable chemoreceptor y4sI 1
Probable diguanylate cyclase CdgI 1
Probable diguanylate cyclase DgcC 2
Probable diguanylate cyclase DgcE 1
Probable diguanylate cyclase DgcF 2
Probable diguanylate cyclase DgcI 2
Probable diguanylate cyclase DgcJ 1
Probable diguanylate cyclase DgcQ 10
Probable diguanylate cyclase DgcT 1
Probable methyl-accepting chemotaxis protein BT9727_0355 1
Probable methyl-accepting chemotaxis protein BT9727_0469 1
Protein PilJ 1
Putative adagio-like protein 2 1
Putative diguanylate cyclase DgcQ 1
Putative methyl-accepting chemotaxis AlkN 2
Putative methyl-accepting chemotaxis protein YoaH 1
Putative methyl-accepting chemotaxis protein sll0041 1
Putative sensory transducer protein 1
Putative sensory transducer protein YfmS 1
Putative sensory transducer protein YvaQ 1
Response regulator PleD 2
Sensory rhodopsin I transducer 3
Sensory rhodopsin II transducer 4
Sensory rhodopsin II transducer (Fragment) 1
Signaling protein YkoW 1
Toxin coregulated pilus biosynthesis protein I 2
Transducer protein BasT 1
Transducer protein Car 1
Transducer protein CosT 2
Transducer protein Htr13 1
Transducer protein Htr18 1
Transducer protein Htr4 2
Transducer protein Htr6 1
Transducer protein Htr7 2
Transducer protein Htr8 1
Transducer protein MpcT 1
Uncharacterized 19.3 kDa protein in repSA 5'region 1
Uncharacterized membrane protein MW0708 1
Uncharacterized membrane protein SA0701 1
Uncharacterized membrane protein SAB0698c 1
Uncharacterized membrane protein SACOL0809 1
Uncharacterized membrane protein SAOUHSC_00760 1
Uncharacterized membrane protein SAR0800 1
Uncharacterized membrane protein SAS0711 1
Uncharacterized membrane protein SAUSA300_0730 1
Uncharacterized membrane protein SAV0746 1
Uncharacterized membrane protein SERP0413 1
Uncharacterized membrane protein SE_0528 1
Uncharacterized membrane protein SH2145 1
Uncharacterized membrane protein SSP1970 1
Uncharacterized membrane protein in llm 5'region 1
Uncharacterized protein MT1397 1
Uncharacterized protein Mb1389c 1
Uncharacterized protein Rv1354c 1
Uncharacterized protein YhcK 1
Uncharacterized protein YtrP 1
Uncharacterized protein in hutH 5'region (Fragment) 1
Uncharacterized protein sll1895 1
Uncharacterized protein y4lL 1
Uncharacterized signaling protein CC_0091 1

Protein length

Min length 301
Max length 514
Mean length (sd) 486.6 (75.0)
Median length 513.0

Protein length distribution