Homologs in group_0

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30 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_00180 FBDBKF_00180 75.4 Morganella morganii S1 cspC Cold shock protein, CspA family
FBDBKF_00840 FBDBKF_00840 76.8 Morganella morganii S1 cspE transcription antiterminator/RNA stability regulator CspE
FBDBKF_10120 FBDBKF_10120 100.0 Morganella morganii S1 cspE transcription antiterminator/RNA stability regulator CspE
FBDBKF_12525 FBDBKF_12525 71.0 Morganella morganii S1 cspC Cold shock protein, CspA family
FBDBKF_16430 FBDBKF_16430 78.3 Morganella morganii S1 cspE transcription antiterminator/RNA stability regulator CspE
EHELCC_00705 EHELCC_00705 76.8 Morganella morganii S2 cspE transcription antiterminator/RNA stability regulator CspE
EHELCC_01365 EHELCC_01365 75.4 Morganella morganii S2 cspC Cold shock protein, CspA family
EHELCC_04920 EHELCC_04920 100.0 Morganella morganii S2 cspE transcription antiterminator/RNA stability regulator CspE
EHELCC_08295 EHELCC_08295 78.3 Morganella morganii S2 cspE transcription antiterminator/RNA stability regulator CspE
NLDBIP_02095 NLDBIP_02095 75.4 Morganella morganii S4 cspC Cold shock protein, CspA family
NLDBIP_02755 NLDBIP_02755 76.8 Morganella morganii S4 cspE transcription antiterminator/RNA stability regulator CspE
NLDBIP_08620 NLDBIP_08620 78.3 Morganella morganii S4 cspE transcription antiterminator/RNA stability regulator CspE
LHKJJB_03610 LHKJJB_03610 75.4 Morganella morganii S3 cspC Cold shock protein, CspA family
LHKJJB_04270 LHKJJB_04270 76.8 Morganella morganii S3 cspE transcription antiterminator/RNA stability regulator CspE
LHKJJB_05645 LHKJJB_05645 78.3 Morganella morganii S3 cspE transcription antiterminator/RNA stability regulator CspE
LHKJJB_13710 LHKJJB_13710 100.0 Morganella morganii S3 cspE transcription antiterminator/RNA stability regulator CspE
HKOGLL_02775 HKOGLL_02775 76.8 Morganella morganii S5 cspE transcription antiterminator/RNA stability regulator CspE
HKOGLL_03435 HKOGLL_03435 75.4 Morganella morganii S5 cspC Cold shock protein, CspA family
HKOGLL_05270 HKOGLL_05270 78.3 Morganella morganii S5 cspE transcription antiterminator/RNA stability regulator CspE
HKOGLL_12825 HKOGLL_12825 100.0 Morganella morganii S5 cspE transcription antiterminator/RNA stability regulator CspE
F4V73_RS00215 F4V73_RS00215 100.0 Morganella psychrotolerans cspE transcription antiterminator/RNA stability regulator CspE
F4V73_RS02950 F4V73_RS02950 78.3 Morganella psychrotolerans cspE transcription antiterminator/RNA stability regulator CspE
F4V73_RS06830 F4V73_RS06830 76.8 Morganella psychrotolerans cspE transcription antiterminator/RNA stability regulator CspE
F4V73_RS07335 F4V73_RS07335 69.6 Morganella psychrotolerans cspA RNA chaperone/antiterminator CspA
F4V73_RS07755 F4V73_RS07755 71.0 Morganella psychrotolerans - cold-shock protein
PMI_RS02060 PMI_RS02060 88.4 Proteus mirabilis HI4320 cspE transcription antiterminator/RNA stability regulator CspE
PMI_RS03965 PMI_RS03965 69.6 Proteus mirabilis HI4320 - cold-shock protein
PMI_RS04480 PMI_RS04480 65.2 Proteus mirabilis HI4320 - cold-shock protein
PMI_RS04745 PMI_RS04745 69.6 Proteus mirabilis HI4320 cspA RNA chaperone/antiterminator CspA
PMI_RS08180 PMI_RS08180 78.3 Proteus mirabilis HI4320 cspE transcription antiterminator/RNA stability regulator CspE

Distribution of the homologs in the orthogroup group_0

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_0

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P63238 1.02e-37 122 85 0 69 3 cspE Cold shock-like protein CspE Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
P63237 1.02e-37 122 85 0 69 3 cspE Cold shock-like protein CspE Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
P0A975 1.63e-37 122 84 0 69 3 cspE Cold shock-like protein CspE Shigella flexneri
E0J1Q3 1.63e-37 122 84 0 69 1 cspE Cold shock-like protein CspE Escherichia coli (strain ATCC 9637 / CCM 2024 / DSM 1116 / LMG 11080 / NBRC 13500 / NCIMB 8666 / NRRL B-766 / W)
P0A972 1.63e-37 122 84 0 69 1 cspE Cold shock-like protein CspE Escherichia coli (strain K12)
P0A973 1.63e-37 122 84 0 69 3 cspE Cold shock-like protein CspE Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0A974 1.63e-37 122 84 0 69 3 cspE Cold shock-like protein CspE Escherichia coli O157:H7
Q89A90 2.67e-37 121 84 0 69 3 cspE Cold shock-like protein CspE Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
P0A9Y9 3.37e-33 111 78 0 69 3 cspC Cold shock-like protein CspC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A9Z0 3.37e-33 111 78 0 69 3 cspC Cold shock-like protein CspC Salmonella typhi
E0J500 3.37e-33 111 78 0 69 1 cspC Cold shock-like protein CspC Escherichia coli (strain ATCC 9637 / CCM 2024 / DSM 1116 / LMG 11080 / NBRC 13500 / NCIMB 8666 / NRRL B-766 / W)
P0A9Y6 3.37e-33 111 78 0 69 1 cspC Cold shock-like protein CspC Escherichia coli (strain K12)
P0A9Y7 3.37e-33 111 78 0 69 3 cspC Cold shock-like protein CspC Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0A9Y8 3.37e-33 111 78 0 69 3 cspC Cold shock-like protein CspC Escherichia coli O157:H7
Q83RI9 1.62e-32 109 76 0 69 3 cspC Cold shock-like protein CspC Shigella flexneri
P57407 4.22e-32 108 75 0 69 3 cspC Cold shock-like protein CspC Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
P0A9Y4 5.27e-29 100 73 0 67 3 cspA Cold shock protein CspA Shigella flexneri
P0A9Y2 5.27e-29 100 73 0 67 3 cspA Cold shock protein CspA Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A9Y3 5.27e-29 100 73 0 67 3 cspA Cold shock protein CspA Salmonella typhi
P0A9Y5 5.27e-29 100 73 0 67 3 cspA Cold shock protein CspA Salmonella enteritidis
Q46664 5.27e-29 100 73 0 67 3 cspA Major cold shock protein Klebsiella aerogenes (strain ATCC 13048 / DSM 30053 / CCUG 1429 / JCM 1235 / KCTC 2190 / NBRC 13534 / NCIMB 10102 / NCTC 10006 / CDC 819-56)
P0A9X9 5.27e-29 100 73 0 67 1 cspA Cold shock protein CspA Escherichia coli (strain K12)
P0A9Y0 5.27e-29 100 73 0 67 3 cspA Cold shock protein CspA Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0A9Y1 5.27e-29 100 73 0 67 3 cspA Cold shock protein CspA Escherichia coli O157:H7
P36995 2.58e-27 96 71 0 66 1 cspB Cold shock-like protein CspB Escherichia coli (strain K12)
P0A981 9.57e-27 95 66 0 68 3 cspG Cold shock-like protein CspG Shigella flexneri
P0A978 9.57e-27 95 66 0 68 1 cspG Cold shock-like protein CspG Escherichia coli (strain K12)
P0A979 9.57e-27 95 66 0 68 3 cspG Cold shock-like protein CspG Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0A980 9.57e-27 95 66 0 68 3 cspG Cold shock-like protein CspG Escherichia coli O157:H7
P62171 1e-26 95 70 1 65 3 cspC Cold shock-like protein CspC Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711)
P62170 1e-26 95 70 1 65 4 cspC Cold shock-like protein CspC Bacillus cereus
P62169 1e-26 95 70 1 65 3 cspC Cold shock-like protein CspC Bacillus anthracis
P0CL01 4.03e-26 93 66 0 68 3 cspJ Cold shock-like protein CspJ Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
E1WGN1 4.03e-26 93 66 0 68 2 cspJ Cold shock-like protein CspJ Salmonella typhimurium (strain SL1344)
P0A986 1.29e-25 92 66 0 68 3 cspI Cold shock-like protein CspI Escherichia coli (strain K12)
P0A987 1.29e-25 92 66 0 68 3 cspI Cold shock-like protein CspI Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0A362 1.72e-25 92 66 0 68 3 cspB Cold shock-like protein CspB Yersinia pestis
P0A363 1.72e-25 92 66 0 68 3 cspB Cold shock-like protein CspB Yersinia enterocolitica
P58726 1.81e-25 92 66 0 68 3 cspJ Cold shock-like protein CspJ Salmonella typhi
Q9S170 2.6e-25 91 68 0 64 2 cspG Cold shock-like protein CspG Shewanella violacea (strain JCM 10179 / CIP 106290 / LMG 19151 / DSS12)
Q9KL16 2.63e-25 91 60 0 68 2 cspV Cold shock protein CspV Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q9KN00 5.32e-25 90 59 0 67 3 cspA Cold shock-like protein CspA Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q4L6A7 5.84e-24 88 65 1 66 3 cspA Cold shock protein CspA Staphylococcus haemolyticus (strain JCSC1435)
Q7A0X3 7.19e-24 87 65 1 66 3 cspA Cold shock protein CspA Staphylococcus aureus (strain MW2)
Q6G9F9 7.19e-24 87 65 1 66 3 cspA Cold shock protein CspA Staphylococcus aureus (strain MSSA476)
Q6GH06 7.19e-24 87 65 1 66 3 cspA Cold shock protein CspA Staphylococcus aureus (strain MRSA252)
Q7A5P3 7.19e-24 87 65 1 66 3 cspA Cold shock protein CspA Staphylococcus aureus (strain N315)
Q7A2R8 7.19e-24 87 65 1 66 3 cspA Cold shock protein CspA Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q5HG18 7.19e-24 87 65 1 66 1 cspA Cold shock protein CspA Staphylococcus aureus (strain COL)
Q2YY16 7.19e-24 87 65 1 66 3 cspA Cold shock protein CspA Staphylococcus aureus (strain bovine RF122 / ET3-1)
Q2FYN2 7.19e-24 87 65 1 66 1 cspA Cold shock protein CspA Staphylococcus aureus (strain NCTC 8325 / PS 47)
Q2FH36 7.19e-24 87 65 1 66 3 cspA Cold shock protein CspA Staphylococcus aureus (strain USA300)
P72366 1.07e-23 87 67 0 64 3 cspA Cold shock-like protein CspA Stigmatella aurantiaca (strain DW4/3-1)
P41016 1.36e-23 87 65 1 66 1 cspB Cold shock protein CspB Bacillus caldolyticus
Q45099 1.66e-23 87 70 1 64 1 cspD Cold shock-like protein CspD Bacillus cereus
Q49XK3 2.49e-23 86 63 1 66 3 cspA Cold shock protein CspA Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41)
Q8CP90 2.49e-23 86 63 1 66 3 cspA Cold shock protein CspA Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
Q5HPE0 2.49e-23 86 63 1 66 3 cspA Cold shock protein CspA Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
P9WP75 2.94e-23 86 63 0 65 1 cspA Probable cold shock protein A Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WP74 2.94e-23 86 63 0 65 3 cspA Probable cold shock protein A Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P63849 2.94e-23 86 63 0 65 3 cspA Probable cold shock protein A Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
A0R5E1 3.43e-23 86 61 0 65 1 cspA Probable cold shock protein A Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)
P42016 4.65e-23 85 63 1 66 2 cspB Cold shock protein CspB Geobacillus stearothermophilus
Q9S1B7 4.94e-23 85 62 0 64 2 cspA Cold shock-like protein CspA Shewanella violacea (strain JCM 10179 / CIP 106290 / LMG 19151 / DSS12)
Q816H3 5.3e-23 85 68 1 64 3 cspD Cold shock-like protein CspD Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711)
Q81K90 5.3e-23 85 68 1 64 3 cspD Cold shock-like protein CspD Bacillus anthracis
O30875 1.15e-22 84 64 0 64 3 cspA Major cold shock protein Micrococcus luteus (strain ATCC 4698 / DSM 20030 / JCM 1464 / CCM 169 / CCUG 5858 / IAM 1056 / NBRC 3333 / NCIMB 9278 / NCTC 2665 / VKM Ac-2230)
P32081 3.01e-22 83 68 1 63 1 cspB Cold shock protein CspB Bacillus subtilis (strain 168)
Q45097 3.16e-22 83 64 1 64 4 cspB Cold shock-like protein CspB Bacillus cereus
P71478 3.46e-22 83 67 1 64 2 csp Cold shock protein 1 Lactiplantibacillus plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1)
O67327 4.33e-22 83 61 0 62 3 csp Cold shock-like protein Aquifex aeolicus (strain VF5)
P96349 4.86e-22 83 66 1 63 2 cspL Cold shock protein 2 Lactiplantibacillus plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1)
P51777 4.97e-22 83 62 1 66 1 cspD Cold shock protein CspD Bacillus subtilis (strain 168)
Q81QK2 7.66e-22 82 65 1 64 3 cspE Cold shock-like protein CspE Bacillus anthracis
P0A357 9.09e-22 82 63 1 66 3 cspLB Cold shock-like protein CspLB Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
P0A358 9.09e-22 82 63 1 66 3 cspLB Cold shock-like protein CspLB Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262)
Q45096 1.02e-21 82 65 1 64 1 cspA Major cold shock protein CspA Bacillus cereus
P0DA49 1.04e-21 82 58 1 65 3 cspA Major cold shock protein Streptococcus pyogenes serotype M3 (strain SSI-1)
P0A361 1.04e-21 82 58 1 65 3 cspA Major cold shock protein Streptococcus pyogenes serotype M18 (strain MGAS8232)
P0DA48 1.04e-21 82 58 1 65 3 cspA Major cold shock protein Streptococcus pyogenes serotype M3 (strain ATCC BAA-595 / MGAS315)
P0C0F1 1.04e-21 82 58 1 65 3 cspA Major cold shock protein Streptococcus pyogenes serotype M1
P54584 1.19e-21 82 60 0 65 2 csp Cold shock protein Arthrobacter globiformis
Q5X9L4 1.61e-21 82 58 1 65 3 cspA Major cold shock protein Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394)
P39158 1.63e-21 81 66 1 62 1 cspC Cold shock protein CspC Bacillus subtilis (strain 168)
Q81DK5 2.22e-21 81 64 1 64 3 cspE Cold shock-like protein CspE Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711)
Q81GQ6 4.38e-21 80 64 1 64 3 cspA Major cold shock protein CspA Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711)
Q81TW8 4.38e-21 80 64 1 64 3 cspA Major cold shock protein CspA Bacillus anthracis
P95459 5.68e-21 80 62 2 67 2 cspA Major cold shock protein CspA Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
O54310 5.8e-21 80 64 1 62 1 csp Cold shock-like protein Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
P0A355 6.27e-21 80 63 1 63 1 cspLA Cold shock-like protein CspLA Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
P0A356 6.27e-21 80 63 1 63 3 cspLA Cold shock-like protein CspLA Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262)
P0A971 1.22e-20 79 53 0 66 3 cspD Cold shock-like protein CspD Shigella flexneri
P0A968 1.22e-20 79 53 0 66 1 cspD Cold shock-like protein CspD Escherichia coli (strain K12)
P0A969 1.22e-20 79 53 0 66 3 cspD Cold shock-like protein CspD Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0A970 1.22e-20 79 53 0 66 3 cspD Cold shock-like protein CspD Escherichia coli O157:H7
P41018 7.35e-20 77 67 1 58 3 cspB Cold shock protein CspB (Fragment) Sporosarcina globispora
P72192 9.52e-20 77 64 2 64 2 tapB Temperature acclimation protein B (Fragment) Pseudomonas fragi
P72188 1.23e-19 77 60 1 64 2 capA Cold shock protein CapA (Fragment) Pseudomonas fragi
P0A105 1.32e-19 77 58 2 70 3 capB Cold shock protein CapB Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000)
P0A106 1.32e-19 77 58 2 70 1 capB Cold shock protein CapB Pseudomonas fragi
Q9KSW4 2.09e-19 76 51 0 68 3 cspD Cold shock-like protein CspD Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
P27484 3.97e-19 79 56 0 62 2 GRP-2 Glycine-rich protein 2 Nicotiana sylvestris
P0A352 8.75e-19 75 57 0 61 3 cspA Cold shock-like protein CspA Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
P0A354 8.75e-19 75 57 0 61 3 cspA Cold shock-like protein CspA Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253)
P0A353 8.75e-19 75 57 0 61 3 cspA Cold shock-like protein CspA Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50)
Q53816 8.97e-19 74 80 0 45 3 cspA Major cold shock protein (Fragment) Shigella boydii
Q56178 8.97e-19 74 80 0 45 3 cspA Major cold shock protein (Fragment) Salmonella virchow
Q46051 8.97e-19 74 80 0 45 3 cspA Major cold shock protein (Fragment) Citrobacter freundii
Q9Z3S6 2.37e-18 73 57 1 61 2 cspA Cold shock protein CspA Rhizobium meliloti (strain 1021)
P48859 8.66e-18 72 53 0 62 2 scoF Cold shock protein ScoF Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
Q56922 1.04e-17 71 80 0 45 3 cspA Major cold shock protein (Fragment) Yersinia enterocolitica
Q48493 2.52e-17 70 73 0 46 3 cspA Major cold shock protein (Fragment) Klebsiella pneumoniae
P46449 2.82e-17 71 50 0 64 3 cspD Cold shock-like protein CspD Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P55390 2.94e-17 71 60 0 50 4 NGR_a00060 Probable cold shock protein y4cH Sinorhizobium fredii (strain NBRC 101917 / NGR234)
Q94C69 7.54e-17 75 50 0 59 1 CSP3 Cold shock domain-containing protein 3 Arabidopsis thaliana
Q45100 8.56e-17 69 70 1 51 1 cspE Cold shock-like protein CspE (Fragment) Bacillus cereus
Q38896 9.43e-17 73 53 1 65 1 CSP4 Cold shock domain-containing protein 4 Arabidopsis thaliana
Q44078 1.24e-16 68 75 0 45 3 cspA Major cold-shock protein (Fragment) Aeromonas hydrophila
Q44317 4.93e-16 67 73 0 45 3 cspA Major cold-shock protein (Fragment) Aeromonas salmonicida
Q9VRN5 5.9e-16 70 50 0 65 2 lin-28 Protein lin-28 homolog Drosophila melanogaster
Q01761 8.91e-16 67 55 1 61 1 SC7.0 Cold shock-like protein 7.0 Streptomyces clavuligerus
O65639 3.68e-15 70 47 0 63 1 CSP1 Cold shock protein 1 Arabidopsis thaliana
P72191 5.77e-15 65 62 1 56 2 tapA Temperature acclimation protein A (Fragment) Pseudomonas fragi
Q52287 6.15e-15 64 68 0 45 3 cspA Major cold shock protein (Fragment) Photobacterium phosphoreum
P41824 6.98e-14 66 46 1 69 2 None Y-box factor homolog Aplysia californica
Q51929 3.45e-13 60 62 0 45 3 cspA Major cold shock protein (Fragment) Photobacterium leiognathi subsp. mandapamensis
Q41188 4.32e-13 63 61 0 42 1 CSP2 Cold shock protein 2 Arabidopsis thaliana
P0A1D9 5.17e-13 60 48 0 64 3 cspH Cold shock-like protein CspH Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A1E0 5.17e-13 60 48 0 64 3 cspH Cold shock-like protein CspH Salmonella typhi
Q53984 5.17e-13 59 64 1 45 3 cspA Major cold shock protein (Fragment) Streptococcus dysgalactiae
Q1RHK6 2.34e-12 58 52 0 61 3 cspA Cold shock-like protein CspA Rickettsia bellii (strain RML369-C)
Q9ZCP9 3.29e-12 58 49 0 61 3 cspA Cold shock-like protein CspA Rickettsia prowazekii (strain Madrid E)
P0A985 3.79e-12 58 48 0 64 3 cspH Cold shock-like protein CspH Shigella flexneri
P0A982 3.79e-12 58 48 0 64 3 cspH Cold shock-like protein CspH Escherichia coli (strain K12)
P0A983 3.79e-12 58 48 0 64 3 cspH Cold shock-like protein CspH Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0A984 3.79e-12 58 48 0 64 3 cspH Cold shock-like protein CspH Escherichia coli O157:H7
P0C0F0 4.44e-12 57 62 1 45 3 cspA Major cold shock protein (Fragment) Streptococcus pyogenes
Q4UMU5 7.31e-12 57 47 0 61 3 cspA Cold shock-like protein CspA Rickettsia felis (strain ATCC VR-1525 / URRWXCal2)
Q9JKB3 8.78e-12 61 44 1 69 1 Ybx3 Y-box-binding protein 3 Mus musculus
P45441 8.8e-12 61 44 1 67 1 ybx2-b Y-box-binding protein 2-B Xenopus laevis
B5DE31 1.02e-11 61 44 1 69 1 ybx1 Y-box-binding protein 1 Danio rerio
P21574 1.48e-11 60 44 1 67 1 ybx2-a Y-box-binding protein 2-A Xenopus laevis
Q62764 1.49e-11 60 44 1 69 1 Ybx3 Y-box-binding protein 3 Rattus norvegicus
P62961 1.57e-11 60 45 1 66 2 Ybx1 Y-box-binding protein 1 Rattus norvegicus
P62960 1.57e-11 60 45 1 66 1 Ybx1 Y-box-binding protein 1 Mus musculus
Q9Z2C8 1.66e-11 60 46 1 65 1 Ybx2 Y-box-binding protein 2 Mus musculus
P67809 1.7e-11 60 45 1 66 1 YBX1 Y-box-binding protein 1 Homo sapiens
P67808 1.7e-11 60 45 1 66 2 YBX1 Y-box-binding protein 1 Bos taurus
Q28618 1.78e-11 60 45 1 66 1 YBX1 Y-box-binding protein 1 Oryctolagus cuniculus
P16989 1.86e-11 60 45 1 66 1 YBX3 Y-box-binding protein 3 Homo sapiens
Q06066 2.09e-11 60 45 1 66 2 YBX1 Y-box-binding protein 1 Gallus gallus
Q9Y2T7 2.1e-11 60 44 1 65 1 YBX2 Y-box-binding protein 2 Homo sapiens
Q92GV1 2.33e-11 56 45 0 61 3 cspA Cold shock-like protein CspA Rickettsia conorii (strain ATCC VR-613 / Malish 7)
Q68W69 3.16e-11 55 47 0 61 3 cspA Cold shock-like protein CspA Rickettsia typhi (strain ATCC VR-144 / Wilmington)
P21573 3.19e-11 59 44 1 69 2 ybx1 Y-box-binding protein 1 Xenopus laevis
Q00436 4.43e-11 59 44 1 69 2 None B box-binding protein Xenopus laevis
P0A976 9.65e-11 54 45 0 64 3 cspF Cold shock-like protein CspF Escherichia coli (strain K12)
P0A977 9.65e-11 54 45 0 64 3 cspF Cold shock-like protein CspF Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q8AVK2 2.24e-09 54 45 1 62 2 lin28b Protein lin-28 homolog B (Fragment) Xenopus laevis
Q6ZN17 5.07e-09 53 42 1 68 1 LIN28B Protein lin-28 homolog B Homo sapiens
Q45KJ6 6.5e-09 53 42 1 68 1 Lin28b Protein lin-28 homolog B Mus musculus
P91599 8.94e-09 52 40 0 55 2 lin-28 Protein lin-28 Caenorhabditis remanei
Q45KJ4 1.12e-08 52 41 1 68 2 LIN28B Protein lin-28 homolog B Gallus gallus
Q61CX7 1.12e-08 52 40 0 55 3 lin-28 Protein lin-28 Caenorhabditis briggsae
P92186 1.61e-08 51 40 0 55 1 lin-28 Protein lin-28 Caenorhabditis elegans
Q9H9Z2 1.43e-07 48 41 1 68 1 LIN28A Protein lin-28 homolog A Homo sapiens
Q8JHC4 1.55e-07 48 40 2 69 2 lin28a Protein lin-28 homolog A Xenopus laevis
Q5EB47 1.62e-07 48 40 2 69 2 lin28a Protein lin-28 homolog A Xenopus tropicalis
Q91YQ3 2.17e-07 47 46 1 52 1 Csdc2 Cold shock domain-containing protein C2 Mus musculus
Q8K3Y3 2.43e-07 48 41 1 68 1 Lin28a Protein lin-28 homolog A Mus musculus
Q45KJ5 5.09e-07 47 41 1 62 2 LIN28A Protein lin-28 homolog A Gallus gallus
Q63430 5.47e-07 47 44 1 52 1 Csdc2 Cold shock domain-containing protein C2 Rattus norvegicus
Q9Y534 5.64e-07 47 44 1 52 1 CSDC2 Cold shock domain-containing protein C2 Homo sapiens
Q803L0 6.18e-07 47 41 1 62 1 lin28a Protein lin-28 homolog A Danio rerio
Q9WU49 3.32e-06 44 41 1 51 1 Carhsp1 Calcium-regulated heat stable protein 1 Rattus norvegicus
Q9Y2V2 3.4e-06 44 41 1 51 1 CARHSP1 Calcium-regulated heat-stable protein 1 Homo sapiens
Q9CR86 3.66e-06 44 41 1 51 1 Carhsp1 Calcium-regulated heat stable protein 1 Mus musculus
Q9VVA0 0.000185 40 42 1 50 1 CG9705 Cold shock domain-containing protein CG9705 Drosophila melanogaster

  • Number of RefSeq hits:

General

Source Morganella morganii S4
Locus tag NLDBIP_04920
Feature type CDS
Gene cspE
Product transcription antiterminator/RNA stability regulator CspE
Location 308055 - 308264 (strand: -1)
Length 210 (nucleotides) / 69 (amino acids)

Contig

Accession ZDB_520
Length 336657 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_0
Orthogroup size 31
N. genomes 7

Actions

Genomic region

Domains

PF00313 'Cold-shock' DNA-binding domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1278 Transcription (K) K Cold shock protein, CspA family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03704 cold shock protein - -

Protein Sequence

MSKRKGNVKWFNEAKGFGFITPEDGSKDVFVHFSAILNDGFKTLAEGQKVEFEIVDGAKGPSAANVVSI

Flanking regions ( +/- flanking 50bp)

ACTGGCCGGGTACTGATGAAGTACTATCACTTGTTAAAGGGTTTTTTTGAATGTCAAAGCGCAAAGGTAACGTGAAGTGGTTTAACGAAGCAAAAGGTTTCGGTTTTATCACTCCGGAAGACGGCAGCAAAGATGTGTTTGTTCACTTCTCTGCAATTCTGAACGACGGTTTCAAAACACTGGCAGAAGGCCAGAAAGTGGAATTTGAAATCGTTGATGGCGCTAAAGGCCCGTCTGCTGCAAACGTTGTCTCGATTTAAGTTGTAACACGCTATACCGTAGCTGTTATTTTAATTCGACATTATCGTGA