Orthogroup:group_398


Homologs in group_398

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_07185 FBDBKF_07185 Morganella morganii S1 cspC Cold shock protein, CspA family
EHELCC_03785 EHELCC_03785 Morganella morganii S2 cspC Cold shock protein, CspA family
NLDBIP_03785 NLDBIP_03785 Morganella morganii S4 cspC Cold shock protein, CspA family
LHKJJB_09615 LHKJJB_09615 Morganella morganii S3 cspC Cold shock protein, CspA family
HKOGLL_09360 HKOGLL_09360 Morganella morganii S5 cspC Cold shock protein, CspA family
F4V73_RS01370 F4V73_RS01370 Morganella psychrotolerans - cold shock domain-containing protein
PMI_RS03540 PMI_RS03540 Proteus mirabilis HI4320 - cold shock domain-containing protein

Distribution of group_398 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_398 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_398

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_398.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 cspC 5
2 - 2

Product

# Product Occurence
1 Cold shock protein, CspA family 5
2 cold shock domain-containing protein 2

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1278 7 K Transcription (K) Cold shock protein, CspA family

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00313 7 'Cold-shock' DNA-binding domain

Annotations of the 165 SwissProt hits

Annotation Number of occurrences
B box-binding protein 1
Cold shock domain-containing protein 3 1
Cold shock domain-containing protein 4 1
Cold shock protein 1
Cold shock protein 1 2
Cold shock protein 2 2
Cold shock protein CapA (Fragment) 1
Cold shock protein CapB 2
Cold shock protein CspA 21
Cold shock protein CspB 3
Cold shock protein CspB (Fragment) 1
Cold shock protein CspC 1
Cold shock protein CspD 1
Cold shock protein CspV 1
Cold shock protein ScoF 1
Cold shock-like protein 2
Cold shock-like protein 7.0 1
Cold shock-like protein CspA 11
Cold shock-like protein CspB 4
Cold shock-like protein CspC 11
Cold shock-like protein CspD 9
Cold shock-like protein CspE 10
Cold shock-like protein CspE (Fragment) 1
Cold shock-like protein CspG 5
Cold shock-like protein CspH 6
Cold shock-like protein CspI 2
Cold shock-like protein CspJ 3
Cold shock-like protein CspLA 2
Cold shock-like protein CspLB 2
Glycine-rich protein 2 1
Major cold shock protein 7
Major cold shock protein (Fragment) 7
Major cold shock protein CspA 4
Major cold-shock protein (Fragment) 2
Probable cold shock protein A 4
Probable cold shock protein y4cH 1
Protein lin-28 1
Protein lin-28 homolog 1
Protein lin-28 homolog A 6
Protein lin-28 homolog B 3
Protein lin-28 homolog B (Fragment) 1
Temperature acclimation protein A (Fragment) 1
Temperature acclimation protein B (Fragment) 1
Y-box factor homolog 1
Y-box-binding protein 1 8
Y-box-binding protein 2 2
Y-box-binding protein 2-A 1
Y-box-binding protein 2-B 1
Y-box-binding protein 3 3

Protein length

Unique protein length 71

Protein length distribution