Orthogroup:group_3730



Homologs in group_3730

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3 homologs were identified in 2 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
F4V73_RS08970 F4V73_RS08970 Morganella psychrotolerans - HlyD family efflux transporter periplasmic adaptor subunit
F4V73_RS09450 F4V73_RS09450 Morganella psychrotolerans - HlyD family type I secretion periplasmic adaptor subunit
PMI_RS10005 PMI_RS10005 Proteus mirabilis HI4320 - HlyD family type I secretion periplasmic adaptor subunit

Distribution of group_3730 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_3730 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_3730

Orthogroup content: 3 members

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This page summarizes the annotation of all members of the orthologous group group_3730.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 - 3

Product

# Product Occurence
1 HlyD family efflux transporter periplasmic adaptor subunit 1
2 HlyD family type I secretion periplasmic adaptor subunit 2

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1566 3 V Defense mechanisms (V) Multidrug resistance efflux pump EmrA

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K12532 1 membrane fusion protein, RTX toxin transport system Two-component system -
K12542 2 membrane fusion protein, adhesin transport system - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF13437 3 HlyD family secretion protein
PF13533 3 Biotin-lipoyl like

Annotations of the 14 SwissProt hits

Annotation Number of occurrences
Alkaline protease secretion protein AprE 1
Colicin V secretion protein CvaA 1
Hemolysin secretion protein D, chromosomal 1
Hemolysin secretion protein D, plasmid 1
Leukotoxin export protein LtxD 1
Leukotoxin secretion protein D 2
Microcin H47 secretion protein MchE 1
Proteases secretion protein PrtE 1
Protein CyaD 2
RTX-I toxin determinant D 1
RTX-III toxin determinant D 1
Type I secretion system membrane fusion protein PrsE 1

Protein length

Min length 397
Max length 454
Mean length (sd) 419.3 (30.4)
Median length 407.0

Protein length distribution