PF00270

Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00270, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 91 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00270
Description DEAD/DEAH box helicase

Occurence in the database

PF00270 is associated with 91 different proteins (see tab "Protein list" and "Profile")
The 91 proteins are classified into 13 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_235 FBDBKF_01470 292494 293840 1 srmB ATP-dependent RNA helicase SrmB Morganella morganii S1
1 group_649 FBDBKF_02210 131952 133877 1 dinG Rad3-related DNA helicase DinG Morganella morganii S1
2 group_664 FBDBKF_02365 162564 166535 1 hrpA ATP-dependent RNA helicase HrpA Morganella morganii S1
3 group_956 FBDBKF_05235 53190 54563 1 dbpA ATP-dependent RNA helicase DbpA Morganella morganii S1
4 group_1169 FBDBKF_06710 4022 6130 1 dinG ATP-dependent DNA helicase DinG Morganella morganii S1
5 group_1311 FBDBKF_08030 138014 140464 1 hrpB ATP-dependent helicase HrpB Morganella morganii S1
6 group_1325 FBDBKF_08205 18067 19362 -1 rhlB ATP-dependent RNA helicase RhlB Morganella morganii S1
7 group_1353 FBDBKF_08385 52577 54403 1 recQ ATP-dependent DNA helicase RecQ Morganella morganii S1
8 group_1410 FBDBKF_08710 122544 124451 1 srmB DEAD/DEAH family ATP-dependent RNA helicase Morganella morganii S1
9 group_1477 FBDBKF_09535 4801 6147 -1 rhlE ATP-dependent RNA helicase RhlE Morganella morganii S1
10 group_1728 FBDBKF_12060 62736 64817 1 recG ATP-dependent DNA helicase RecG Morganella morganii S1
11 group_1756 FBDBKF_12230 105292 107493 1 priA primosomal protein N' Morganella morganii S1
12 group_1949 FBDBKF_14635 23703 27143 1 mfd transcription-repair coupling factor Morganella morganii S1
13 group_235 EHELCC_00075 15028 16374 -1 srmB ATP-dependent RNA helicase SrmB Morganella morganii S2
14 group_649 EHELCC_02680 519772 521697 1 dinG Rad3-related DNA helicase DinG Morganella morganii S2
15 group_664 EHELCC_02835 550384 554355 1 hrpA ATP-dependent RNA helicase HrpA Morganella morganii S2
16 group_1169 EHELCC_04260 180056 182164 -1 dinG ATP-dependent DNA helicase DinG Morganella morganii S2
17 group_1477 EHELCC_04335 196766 198112 -1 rhlE ATP-dependent RNA helicase RhlE Morganella morganii S2
18 group_956 EHELCC_12355 126931 128304 -1 dbpA ATP-dependent RNA helicase DbpA Morganella morganii S2
19 group_1410 EHELCC_12815 39274 41181 -1 srmB DEAD/DEAH family ATP-dependent RNA helicase Morganella morganii S2
20 group_1353 EHELCC_13140 109322 111148 -1 recQ ATP-dependent DNA helicase RecQ Morganella morganii S2
21 group_1325 EHELCC_13320 144363 145658 1 rhlB ATP-dependent RNA helicase RhlB Morganella morganii S2
22 group_1311 EHELCC_13860 112208 114658 1 hrpB ATP-dependent helicase HrpB Morganella morganii S2
23 group_1756 EHELCC_14075 27212 29413 -1 priA primosomal protein N' Morganella morganii S2
24 group_1728 EHELCC_14245 69888 71969 -1 recG ATP-dependent DNA helicase RecG Morganella morganii S2
25 group_1949 EHELCC_15440 53779 57219 1 mfd transcription-repair coupling factor Morganella morganii S2
26 group_664 NLDBIP_00625 125781 129752 -1 hrpA ATP-dependent RNA helicase HrpA Morganella morganii S4
27 group_649 NLDBIP_00780 158439 160364 -1 dinG Rad3-related DNA helicase DinG Morganella morganii S4
28 group_235 NLDBIP_03385 663762 665108 1 srmB ATP-dependent RNA helicase SrmB Morganella morganii S4
29 group_1169 NLDBIP_04260 179852 181960 -1 dinG ATP-dependent DNA helicase DinG Morganella morganii S4
30 group_1477 NLDBIP_04335 196562 197908 -1 rhlE ATP-dependent RNA helicase RhlE Morganella morganii S4
31 group_956 NLDBIP_12695 126886 128259 -1 dbpA ATP-dependent RNA helicase DbpA Morganella morganii S4
32 group_1410 NLDBIP_13155 39274 41181 -1 srmB DEAD/DEAH family ATP-dependent RNA helicase Morganella morganii S4
33 group_1353 NLDBIP_13480 109322 111148 -1 recQ ATP-dependent DNA helicase RecQ Morganella morganii S4
34 group_1325 NLDBIP_13660 144363 145658 1 rhlB ATP-dependent RNA helicase RhlB Morganella morganii S4
35 group_1311 NLDBIP_14305 133083 135533 1 hrpB ATP-dependent helicase HrpB Morganella morganii S4
36 group_1756 NLDBIP_15170 31149 33350 -1 priA primosomal protein N' Morganella morganii S4
37 group_1728 NLDBIP_15340 73825 75906 -1 recG ATP-dependent DNA helicase RecG Morganella morganii S4
38 group_1949 NLDBIP_15970 53779 57219 1 mfd transcription-repair coupling factor Morganella morganii S4
39 group_649 LHKJJB_01255 232321 234246 1 dinG Rad3-related DNA helicase DinG Morganella morganii S3
40 group_664 LHKJJB_01410 262933 266904 1 hrpA ATP-dependent RNA helicase HrpA Morganella morganii S3
41 group_235 LHKJJB_04900 271003 272349 1 srmB ATP-dependent RNA helicase SrmB Morganella morganii S3
42 group_1311 LHKJJB_08545 24216 26666 -1 hrpB ATP-dependent helicase HrpB Morganella morganii S3
43 group_1169 LHKJJB_10090 179966 182074 -1 dinG ATP-dependent DNA helicase DinG Morganella morganii S3
44 group_956 LHKJJB_12555 126931 128304 -1 dbpA ATP-dependent RNA helicase DbpA Morganella morganii S3
45 group_1325 LHKJJB_12895 16785 18080 -1 rhlB ATP-dependent RNA helicase RhlB Morganella morganii S3
46 group_1353 LHKJJB_13075 51295 53121 1 recQ ATP-dependent DNA helicase RecQ Morganella morganii S3
47 group_1410 LHKJJB_13400 121262 123169 1 srmB DEAD/DEAH family ATP-dependent RNA helicase Morganella morganii S3
48 group_1477 LHKJJB_14295 137470 138816 1 rhlE ATP-dependent RNA helicase RhlE Morganella morganii S3
49 group_1728 LHKJJB_15270 62736 64817 1 recG ATP-dependent DNA helicase RecG Morganella morganii S3
50 group_1756 LHKJJB_15440 105292 107493 1 priA primosomal protein N' Morganella morganii S3
51 group_1949 LHKJJB_15870 59467 62907 -1 mfd transcription-repair coupling factor Morganella morganii S3
52 group_649 HKOGLL_01295 237832 239757 1 dinG Rad3-related DNA helicase DinG Morganella morganii S5
53 group_664 HKOGLL_01450 268444 272415 1 hrpA ATP-dependent RNA helicase HrpA Morganella morganii S5
54 group_235 HKOGLL_02145 15233 16579 -1 srmB ATP-dependent RNA helicase SrmB Morganella morganii S5
55 group_1311 HKOGLL_08095 24216 26666 -1 hrpB ATP-dependent helicase HrpB Morganella morganii S5
56 group_1169 HKOGLL_08885 8978 11086 1 dinG ATP-dependent DNA helicase DinG Morganella morganii S5
57 group_956 HKOGLL_11170 126931 128304 -1 dbpA ATP-dependent RNA helicase DbpA Morganella morganii S5
58 group_1410 HKOGLL_11630 39274 41181 -1 srmB DEAD/DEAH family ATP-dependent RNA helicase Morganella morganii S5
59 group_1353 HKOGLL_11955 109322 111148 -1 recQ ATP-dependent DNA helicase RecQ Morganella morganii S5
60 group_1325 HKOGLL_12135 144363 145658 1 rhlB ATP-dependent RNA helicase RhlB Morganella morganii S5
61 group_1477 HKOGLL_12240 5582 6928 -1 rhlE ATP-dependent RNA helicase RhlE Morganella morganii S5
62 group_1728 HKOGLL_14390 49399 51480 1 recG ATP-dependent DNA helicase RecG Morganella morganii S5
63 group_1756 HKOGLL_14560 91955 94156 1 priA primosomal protein N' Morganella morganii S5
64 group_1949 HKOGLL_14990 58679 62119 -1 mfd transcription-repair coupling factor Morganella morganii S5
65 group_1477 F4V73_RS00830 171998 173353 1 rhlE ATP-dependent RNA helicase RhlE Morganella psychrotolerans
66 group_1169 F4V73_RS00850 176250 178349 1 dinG ATP-dependent DNA helicase DinG Morganella psychrotolerans
67 group_235 F4V73_RS01935 422802 424154 -1 srmB ATP-dependent RNA helicase SrmB Morganella psychrotolerans
68 group_649 F4V73_RS04580 968660 970591 1 ATP-dependent DNA helicase Morganella psychrotolerans
69 group_664 F4V73_RS04745 1001257 1005150 1 hrpA ATP-dependent RNA helicase HrpA Morganella psychrotolerans
70 group_956 F4V73_RS05690 1209555 1210928 1 dbpA ATP-dependent RNA helicase DbpA Morganella psychrotolerans
71 group_1949 F4V73_RS07430 1552073 1555513 1 mfd transcription-repair coupling factor Morganella psychrotolerans
72 group_1353 F4V73_RS09585 17320 19146 1 recQ ATP-dependent DNA helicase RecQ Morganella psychrotolerans
73 group_1410 F4V73_RS09925 89727 91724 1 DEAD/DEAH family ATP-dependent RNA helicase Morganella psychrotolerans
74 group_1311 F4V73_RS12960 203262 205712 -1 hrpB ATP-dependent helicase HrpB Morganella psychrotolerans
75 group_1728 F4V73_RS14585 149565 151646 -1 recG ATP-dependent DNA helicase RecG Morganella psychrotolerans
76 group_1756 F4V73_RS17060 38792 40993 1 priA primosomal protein N' Morganella psychrotolerans
77 group_1325 F4V73_RS18755 19221 20516 -1 rhlB ATP-dependent RNA helicase RhlB Morganella psychrotolerans
78 group_956 PMI_RS00530 136845 138218 1 dbpA ATP-dependent RNA helicase DbpA Proteus mirabilis HI4320
79 group_1311 PMI_RS00975 237537 239966 1 hrpB ATP-dependent helicase HrpB Proteus mirabilis HI4320
80 group_1477 PMI_RS03055 673134 674531 1 rhlE ATP-dependent RNA helicase RhlE Proteus mirabilis HI4320
81 group_1169 PMI_RS03105 684437 686545 1 dinG ATP-dependent DNA helicase DinG Proteus mirabilis HI4320
82 group_1949 PMI_RS04305 965251 968706 -1 mfd transcription-repair coupling factor Proteus mirabilis HI4320
83 group_664 PMI_RS05750 1252744 1256640 1 hrpA ATP-dependent RNA helicase HrpA Proteus mirabilis HI4320
84 group_235 PMI_RS09360 2042522 2043877 1 srmB ATP-dependent RNA helicase SrmB Proteus mirabilis HI4320
85 group_235 PMI_RS12250 2707018 2713440 -1 DEAD/DEAH box helicase Proteus mirabilis HI4320
86 group_1728 PMI_RS14165 3143801 3145888 1 recG ATP-dependent DNA helicase RecG Proteus mirabilis HI4320
87 group_1756 PMI_RS15920 3533192 3535393 -1 priA primosomal protein N' Proteus mirabilis HI4320
88 group_1325 PMI_RS16465 3631136 3632434 -1 rhlB ATP-dependent RNA helicase RhlB Proteus mirabilis HI4320
89 group_1353 PMI_RS16640 3667239 3669068 1 recQ ATP-dependent DNA helicase RecQ Proteus mirabilis HI4320
90 group_1410 PMI_RS17055 3753090 3754925 1 DEAD/DEAH family ATP-dependent RNA helicase Proteus mirabilis HI4320