Orthogroup:group_1229


Homologs in group_1229

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_07160 FBDBKF_07160 Morganella morganii S1 rpsA 30S ribosomal protein S1
EHELCC_03810 EHELCC_03810 Morganella morganii S2 rpsA 30S ribosomal protein S1
NLDBIP_03810 NLDBIP_03810 Morganella morganii S4 rpsA 30S ribosomal protein S1
LHKJJB_09640 LHKJJB_09640 Morganella morganii S3 rpsA 30S ribosomal protein S1
HKOGLL_09335 HKOGLL_09335 Morganella morganii S5 rpsA 30S ribosomal protein S1
F4V73_RS01345 F4V73_RS01345 Morganella psychrotolerans rpsA 30S ribosomal protein S1
PMI_RS03515 PMI_RS03515 Proteus mirabilis HI4320 rpsA 30S ribosomal protein S1

Distribution of group_1229 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1229 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1229

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1229.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 rpsA 7

Product

# Product Occurence
1 30S ribosomal protein S1 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0539 7 J Translation, ribosomal structure and biogenesis (J) Ribosomal protein S1

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K02945 7 small subunit ribosomal protein S1 Ribosome -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00575 7 S1 RNA binding domain

Annotations of the 509 SwissProt hits

Annotation Number of occurrences
4-hydroxy-3-methylbut-2-enyl diphosphate reductase 3
General stress protein 13 1
Polyprotein of EF-Ts, chloroplastic 4
Polyribonucleotide nucleotidyltransferase 426
Polyribonucleotide nucleotidyltransferase 1 1
Polyribonucleotide nucleotidyltransferase 2 1
Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22 1
Pre-mRNA-splicing factor ATP-dependent RNA helicase prp22 1
Protein PIGMENT DEFECTIVE 338, chloroplastic 1
Protein RRP5 homolog 3
Protein YhgF 1
Protein tex 1
Small ribosomal subunit protein bS1 41
Small ribosomal subunit protein bS1 (Fragment) 1
Small ribosomal subunit protein bS1 homolog 2
Small ribosomal subunit protein bS1A 1
Small ribosomal subunit protein bS1B 1
Small ribosomal subunit protein bS1c 4
Small ribosomal subunit protein bS1m 1
Transcriptional accessory protein Tex 1
Translation initiation factor 2 subunit alpha 3
Uncharacterized protein HI_0568 1
Uncharacterized protein NMA0194 1
Uncharacterized protein NMB0075 1
Uncharacterized protein YabR 1
Uncharacterized protein YdcI 1
Zinc finger CCHC domain-containing protein 17 2
rRNA biogenesis protein RRP5 2
rRNA biogenesis protein rrp5 1

Protein length

Unique protein length 557

Protein length distribution