COG1566


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1566, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 52 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Multidrug resistance efflux pump EmrA
Function(s) descr. Defense mechanisms (V)

Occurence in the database

COG1566 is associated with 52 different proteins (see tab "Protein list" and "Profile")
The 52 proteins are classified into 7 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_43 FBDBKF_04605 120141 121331 -1 emrA Multidrug resistance efflux pump EmrA Morganella morganii S1
1 group_893 FBDBKF_04665 132669 133742 1 emrA Multidrug resistance efflux pump EmrA Morganella morganii S1
2 group_2673 FBDBKF_04875 182010 183296 -1 emrA Multidrug resistance efflux pump EmrA Morganella morganii S1
3 group_1305 FBDBKF_07990 129927 131234 1 emrA Multidrug resistance efflux pump EmrA Morganella morganii S1
4 group_1412 FBDBKF_08725 127231 128202 1 emrA Multidrug resistance efflux pump EmrA Morganella morganii S1
5 group_321 FBDBKF_09545 7087 8085 1 hlyD secretion protein HlyD Morganella morganii S1
6 group_43 FBDBKF_10185 129194 130372 1 emrA multidrug efflux MFS transporter periplasmic adaptor subunit EmrA Morganella morganii S1
7 group_321 EHELCC_04345 199052 200050 1 hlyD secretion protein HlyD Morganella morganii S2
8 group_43 EHELCC_04985 321159 322337 1 emrA multidrug efflux MFS transporter periplasmic adaptor subunit EmrA Morganella morganii S2
9 group_43 EHELCC_05895 179598 180788 -1 emrA Multidrug resistance efflux pump EmrA Morganella morganii S2
10 group_893 EHELCC_05955 192126 193199 1 emrA Multidrug resistance efflux pump EmrA Morganella morganii S2
11 group_2673 EHELCC_06165 241467 242753 -1 emrA Multidrug resistance efflux pump EmrA Morganella morganii S2
12 group_1412 EHELCC_12800 35523 36494 -1 emrA Multidrug resistance efflux pump EmrA Morganella morganii S2
13 group_1305 EHELCC_13820 104121 105428 1 emrA Multidrug resistance efflux pump EmrA Morganella morganii S2
14 group_321 NLDBIP_04345 198848 199846 1 hlyD secretion protein HlyD Morganella morganii S4
15 group_43 NLDBIP_04985 320955 322133 1 emrA multidrug efflux MFS transporter periplasmic adaptor subunit EmrA Morganella morganii S4
16 group_43 NLDBIP_06215 220663 221853 -1 emrA Multidrug resistance efflux pump EmrA Morganella morganii S4
17 group_893 NLDBIP_06275 233191 234264 1 emrA Multidrug resistance efflux pump EmrA Morganella morganii S4
18 group_2673 NLDBIP_06485 282532 283818 -1 emrA Multidrug resistance efflux pump EmrA Morganella morganii S4
19 group_1412 NLDBIP_13140 35523 36494 -1 emrA Multidrug resistance efflux pump EmrA Morganella morganii S4
20 group_1305 NLDBIP_14265 124996 126303 1 emrA Multidrug resistance efflux pump EmrA Morganella morganii S4
21 group_43 LHKJJB_03095 198187 199377 -1 emrA Multidrug resistance efflux pump EmrA Morganella morganii S3
22 group_893 LHKJJB_03155 210715 211788 1 emrA Multidrug resistance efflux pump EmrA Morganella morganii S3
23 group_2673 LHKJJB_03365 260056 261342 -1 emrA Multidrug resistance efflux pump EmrA Morganella morganii S3
24 group_1305 LHKJJB_08585 33446 34753 -1 emrA Multidrug resistance efflux pump EmrA Morganella morganii S3
25 group_1412 LHKJJB_13415 125949 126920 1 emrA Multidrug resistance efflux pump EmrA Morganella morganii S3
26 group_43 LHKJJB_13645 13245 14423 -1 emrA multidrug efflux MFS transporter periplasmic adaptor subunit EmrA Morganella morganii S3
27 group_321 LHKJJB_14285 135532 136530 -1 hlyD secretion protein HlyD Morganella morganii S3
28 group_43 HKOGLL_06570 120051 121241 -1 emrA Multidrug resistance efflux pump EmrA Morganella morganii S5
29 group_893 HKOGLL_06630 132579 133652 1 emrA Multidrug resistance efflux pump EmrA Morganella morganii S5
30 group_2673 HKOGLL_06840 181920 183206 -1 emrA Multidrug resistance efflux pump EmrA Morganella morganii S5
31 group_1305 HKOGLL_08135 33446 34753 -1 emrA Multidrug resistance efflux pump EmrA Morganella morganii S5
32 group_1412 HKOGLL_11615 35523 36494 -1 emrA Multidrug resistance efflux pump EmrA Morganella morganii S5
33 group_321 HKOGLL_12250 7868 8866 1 hlyD secretion protein HlyD Morganella morganii S5
34 group_43 HKOGLL_12890 129975 131153 1 emrA multidrug efflux MFS transporter periplasmic adaptor subunit EmrA Morganella morganii S5
35 group_43 F4V73_RS00155 40719 41897 -1 emrA multidrug efflux MFS transporter periplasmic adaptor subunit EmrA Morganella psychrotolerans
36 group_321 F4V73_RS00820 170059 171048 -1 hlyD secretion protein HlyD Morganella psychrotolerans
37 group_3730 F4V73_RS08970 1864044 1865237 -1 HlyD family efflux transporter periplasmic adaptor subunit Morganella psychrotolerans
38 group_43 F4V73_RS09055 1893555 1894745 -1 EmrA/EmrK family multidrug efflux transporter periplasmic adaptor subunit Morganella psychrotolerans
39 group_893 F4V73_RS09130 1910350 1911423 1 HlyD family efflux transporter periplasmic adaptor subunit Morganella psychrotolerans
40 group_3730 F4V73_RS09450 1992883 1994106 -1 HlyD family type I secretion periplasmic adaptor subunit Morganella psychrotolerans
41 group_2673 F4V73_RS09475 2001469 2002794 -1 HlyD family secretion protein Morganella psychrotolerans
42 group_1412 F4V73_RS09945 95818 96789 1 efflux RND transporter periplasmic adaptor subunit Morganella psychrotolerans
43 group_1305 F4V73_RS12995 211817 213133 -1 HlyD family type I secretion periplasmic adaptor subunit Morganella psychrotolerans
44 group_1305 PMI_RS01345 325713 327038 -1 HlyD family type I secretion periplasmic adaptor subunit Proteus mirabilis HI4320
45 group_43 PMI_RS01985 468236 469411 -1 emrA multidrug efflux MFS transporter periplasmic adaptor subunit EmrA Proteus mirabilis HI4320
46 group_321 PMI_RS03045 671121 672107 -1 hlyD secretion protein HlyD Proteus mirabilis HI4320
47 group_893 PMI_RS05900 1293788 1294861 1 biotin/lipoyl-binding protein Proteus mirabilis HI4320
48 group_321 PMI_RS06105 1338416 1339456 1 mdtN multidrug transporter subunit MdtN Proteus mirabilis HI4320
49 group_3730 PMI_RS10005 2170131 2171495 1 HlyD family type I secretion periplasmic adaptor subunit Proteus mirabilis HI4320
50 group_43 PMI_RS15260 3385691 3386791 1 HlyD family secretion protein Proteus mirabilis HI4320
51 group_1412 PMI_RS17105 3762520 3763491 1 efflux RND transporter periplasmic adaptor subunit Proteus mirabilis HI4320