Homologs in group_3730

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2 homologs were identified in 2 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
F4V73_RS09450 F4V73_RS09450 45.7 Morganella psychrotolerans - HlyD family type I secretion periplasmic adaptor subunit
PMI_RS10005 PMI_RS10005 27.2 Proteus mirabilis HI4320 - HlyD family type I secretion periplasmic adaptor subunit

Distribution of the homologs in the orthogroup group_3730

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3730

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q7ANN5 1.13e-27 116 26 13 408 1 prsE Type I secretion system membrane fusion protein PrsE Rhizobium meliloti (strain 1021)
P09986 3.44e-26 113 26 10 441 1 hlyD Hemolysin secretion protein D, chromosomal Escherichia coli
Q03025 4.89e-25 109 24 12 420 3 aprE Alkaline protease secretion protein AprE Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P06739 5e-25 109 27 13 443 1 hlyD Hemolysin secretion protein D, plasmid Escherichia coli
P0DKX9 7.22e-25 108 25 8 387 3 cyaD Protein CyaD Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
J7QCA7 7.22e-25 108 25 8 387 3 cyaD Protein CyaD Bordetella pertussis (strain ATCC 9797 / DSM 5571 / CCUG 30873 / LMG 14455 / NCTC 10739 / 18323)
P16534 1.69e-24 108 25 10 438 3 lktD Leukotoxin secretion protein D Mannheimia haemolytica
P23597 3.75e-24 107 24 11 424 3 prtE Proteases secretion protein PrtE Dickeya chrysanthemi
P55125 1.06e-22 102 24 9 437 3 lktD Leukotoxin secretion protein D Pasteurella haemolytica-like sp. (strain 5943B)
P18790 3.13e-21 98 25 14 428 1 ltxD Leukotoxin export protein LtxD Aggregatibacter actinomycetemcomitans
P26761 3.47e-21 98 24 12 439 3 apxID RTX-I toxin determinant D Actinobacillus pleuropneumoniae
Q08633 5.37e-19 92 23 13 444 3 apxIIID RTX-III toxin determinant D Actinobacillus pleuropneumoniae

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS08970
Feature type CDS
Gene -
Product HlyD family efflux transporter periplasmic adaptor subunit
Location 1864044 - 1865237 (strand: -1)
Length 1194 (nucleotides) / 397 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3730
Orthogroup size 3
N. genomes 2

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Genomic region

Domains

PF13437 HlyD family secretion protein
PF13533 Biotin-lipoyl like

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1566 Defense mechanisms (V) V Multidrug resistance efflux pump EmrA

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K12542 membrane fusion protein, adhesin transport system - -

Protein Sequence

MEDSIDDAADFGLVDDVKSSKANRMVLAVFAFFILMFIWAWLSEISEVTKGSGKVIPSSKEQIIQSLDGGIITYIAIKEGDIVQAGQTLAMLDSTRTTSNLEESVAKYNTALAASVRLQAEVDKNPSDKLLFPDELDNNPALKEYETKLWISRKHQFNQTIANLQKSQANISRQLNINRQLEKAGASSVMDILRLEKELIDLRSKEEEYIANFYVTSHQELAKIMAEVNSLTPLIKGRQDYVSRTVITSPVKGIVKNIQTSTIGGVVPPNGILMDIVPLEDTLIIEAKISPKDIAFIHPGQTAKVKITAYDYAIFGGLEGVVHVISPDTVKDEVKSDVTWYRIYVQTQSDHLVNKSGQSFAITPGMIATIEITTGSKTVLQYLIKPFNKVNEALRER

Flanking regions ( +/- flanking 50bp)

TTAAAGACTTTTGCTATATCACCAGTAAAAAAGACAGTGAATTATATACCATCGAGGACAGTATTGATGATGCCGCTGATTTTGGTCTGGTAGATGATGTTAAATCCAGTAAAGCAAACCGGATGGTGCTGGCCGTTTTTGCTTTTTTTATTCTGATGTTTATCTGGGCATGGCTTTCTGAAATATCGGAAGTGACAAAAGGGAGCGGAAAAGTTATCCCCAGTTCAAAAGAGCAGATTATTCAGTCTCTGGATGGCGGGATCATTACCTATATTGCAATAAAAGAGGGGGATATTGTTCAGGCGGGGCAGACATTGGCGATGCTGGATTCAACACGGACCACGTCGAATCTGGAAGAGTCAGTGGCGAAATACAATACAGCCCTGGCAGCATCTGTACGTTTACAGGCGGAAGTGGATAAAAACCCGTCGGATAAACTTCTTTTCCCGGATGAACTGGATAATAACCCCGCGCTGAAAGAGTATGAAACTAAATTATGGATTTCACGTAAGCATCAGTTTAATCAGACAATTGCTAACCTGCAAAAAAGCCAGGCGAATATATCCCGGCAACTGAATATTAACCGGCAGTTGGAAAAAGCCGGCGCGAGCAGTGTGATGGATATTCTGCGCCTTGAAAAAGAGCTGATTGATTTGCGCAGTAAAGAAGAAGAATACATCGCGAATTTTTATGTCACTTCCCACCAGGAGTTAGCAAAAATAATGGCGGAGGTAAACAGTCTGACGCCGTTAATTAAAGGGCGTCAGGATTATGTATCAAGAACCGTTATTACATCACCGGTAAAAGGAATTGTTAAAAATATCCAGACATCCACTATCGGCGGGGTGGTTCCGCCTAACGGGATTCTGATGGATATTGTTCCTCTGGAAGATACCTTAATTATTGAGGCAAAAATCTCACCGAAAGATATCGCCTTTATCCATCCGGGACAAACCGCAAAAGTAAAAATTACCGCCTATGACTACGCGATATTCGGCGGGCTGGAAGGCGTTGTGCATGTTATTTCGCCCGATACAGTAAAAGATGAAGTAAAGAGTGATGTAACCTGGTACAGAATTTATGTTCAGACACAGTCTGATCATCTGGTAAATAAATCCGGGCAGTCATTTGCTATTACGCCCGGGATGATCGCCACCATTGAAATAACAACCGGCAGTAAAACGGTGCTGCAATACCTGATAAAGCCCTTTAATAAGGTAAATGAGGCACTGAGAGAGCGCTAAATATACCCTTATTCATTCAAACTGCAGGTTCGTTGGCTACGCTCAGCCTG