Orthogroup:group_456


Homologs in group_456

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_04605 FBDBKF_04605 Morganella morganii S1 emrA Multidrug resistance efflux pump EmrA
EHELCC_05895 EHELCC_05895 Morganella morganii S2 emrA Multidrug resistance efflux pump EmrA
NLDBIP_06215 NLDBIP_06215 Morganella morganii S4 emrA Multidrug resistance efflux pump EmrA
LHKJJB_03095 LHKJJB_03095 Morganella morganii S3 emrA Multidrug resistance efflux pump EmrA
HKOGLL_06570 HKOGLL_06570 Morganella morganii S5 emrA Multidrug resistance efflux pump EmrA
F4V73_RS09055 F4V73_RS09055 Morganella psychrotolerans - EmrA/EmrK family multidrug efflux transporter periplasmic adaptor subunit
PMI_RS15260 PMI_RS15260 Proteus mirabilis HI4320 - HlyD family secretion protein

Distribution of group_456 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_456 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_456

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_456.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 emrA 5
2 - 2

Product

# Product Occurence
1 Multidrug resistance efflux pump EmrA 5
2 EmrA/EmrK family multidrug efflux transporter periplasmic adaptor subunit 1
3 HlyD family secretion protein 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1566 7 V Defense mechanisms (V) Multidrug resistance efflux pump EmrA

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K03543 7 membrane fusion protein, multidrug efflux system - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00529 7 Cation efflux system protein CusB domain 1
PF16576 7 Barrel-sandwich domain of CusB or HlyD membrane-fusion

Annotations of the 152 SwissProt hits

Annotation Number of occurrences
36 kDa antigen 1
Cation efflux system protein CzcB 1
Cobalt-zinc-cadmium resistance protein CzcB 1
Colistin resistance protein EmrA 1
Fatty acid resistance protein FarA 1
Inner membrane protein YiaV 1
Inner membrane protein YibH 2
Multidrug export protein EmrA 2
Multidrug resistance protein MdtA 17
Multidrug resistance protein MdtN 4
Nickel and cobalt resistance protein CnrB 1
Nickel-cobalt-cadmium resistance protein NccB 1
Nodulation protein NolF 1
Probable multidrug resistance protein EmrK 1
Putative efflux system component YhbJ 1
UPF0194 membrane protein CKO_02332 1
UPF0194 membrane protein Ent638_1286 1
UPF0194 membrane protein RB0873 1
UPF0194 membrane protein YE2891 1
UPF0194 membrane protein YPA_1093 1
UPF0194 membrane protein YPK_2900 1
UPF0194 membrane protein YPN_2816 1
UPF0194 membrane protein YPTB1212 1
UPF0194 membrane protein YPTS_1292 1
UPF0194 membrane protein YP_0975 1
UPF0194 membrane protein YbhG 42
UPF0194 membrane protein YpsIP31758_2812 1
UPF0194 membrane protein in asrC 5'region (Fragment) 1
Uncharacterized protein HI_0894 1
Uncharacterized protein YdhJ 1
Uncharacterized protein YhiI 1
p-hydroxybenzoic acid efflux pump subunit AaeA 59

Protein length

Min length 366
Max length 396
Mean length (sd) 391.7 (11.3)
Median length 396.0

Protein length distribution