Orthogroup:group_963


Homologs in group_963

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_05305 FBDBKF_05305 Morganella morganii S1 ddpA ABC-type transport system, periplasmic component
EHELCC_12285 EHELCC_12285 Morganella morganii S2 ddpA ABC-type transport system, periplasmic component
NLDBIP_12625 NLDBIP_12625 Morganella morganii S4 ddpA ABC-type transport system, periplasmic component
LHKJJB_12485 LHKJJB_12485 Morganella morganii S3 ddpA ABC-type transport system, periplasmic component
HKOGLL_11100 HKOGLL_11100 Morganella morganii S5 ddpA ABC-type transport system, periplasmic component
F4V73_RS05760 F4V73_RS05760 Morganella psychrotolerans - ABC transporter substrate-binding protein
PMI_RS07165 PMI_RS07165 Proteus mirabilis HI4320 - ABC transporter substrate-binding protein

Distribution of group_963 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_963 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_963

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_963.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 ddpA 5
2 - 2

Product

# Product Occurence
1 ABC-type transport system, periplasmic component 5
2 ABC transporter substrate-binding protein 2

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0747 7 E Amino acid transport and metabolism (E) ABC-type transport system, periplasmic component

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00496 7 Bacterial extracellular solute-binding proteins, family 5 Middle

Annotations of the 56 SwissProt hits

Annotation Number of occurrences
Di/tripeptide-binding protein 1 1
Di/tripeptide-binding protein 2 1
Di/tripeptide-binding protein 3 1
Di/tripeptide-binding protein 4 1
Dipeptide-binding protein 3
Dipeptide-binding protein DppE 1
Glutathione-binding protein GsiB 16
Heme-binding protein A 1
Metal-staphylopine-binding protein CntA 2
Nickel-binding periplasmic protein 1
Oligopeptide-binding protein AppA 1
Oligopeptide-binding protein OppA 1
Peptide transport periplasmic protein SapA 2
Peptidoglycan-binding protein YepA 1
Periplasmic murein peptide-binding protein MppA 1
Periplasmic oligopeptide-binding protein OppA 3
Probable ABC transporter periplasmic-binding protein SapA 1
Probable D,D-dipeptide-binding periplasmic protein DdpA 1
Probable deoxycholate-binding periplasmic protein YgiS 1
Probable di/tripeptide-binding protein 5 1
Putative ABC transporter peptide-binding protein BAB2_0812 1
Putative ABC transporter peptide-binding protein BMEII0859 1
Putative ABC transporter peptide-binding protein BOV_A0352 1
Putative ABC transporter peptide-binding protein BRA0409/BS1330_II0406 1
Putative ABC transporter peptide-binding protein BruAb2_0792 1
Putative binding protein BAB2_0664 1
Putative binding protein BMEII0691 1
Putative binding protein BRA0576/BS1330_II0571 1
Putative binding protein BruAb2_0648 1
Putative peptide-binding periplasmic protein BAB2_1049 1
Putative peptide-binding periplasmic protein BMEII0210 1
Putative peptide-binding periplasmic protein BRA1090/BS1330_II1082 1
Putative peptide-binding periplasmic protein BruAb2_1030 1
Tripeptide-binding protein 1
Uncharacterized protein y4wM 1

Protein length

Min length 521
Max length 522
Mean length (sd) 521.9 (0.4)
Median length 522.0

Protein length distribution