Homologs in group_3690

Help

2 homologs were identified in 1 genome with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
F4V73_RS08970 F4V73_RS08970 27.2 Morganella psychrotolerans - HlyD family efflux transporter periplasmic adaptor subunit
F4V73_RS09450 F4V73_RS09450 28.6 Morganella psychrotolerans - HlyD family type I secretion periplasmic adaptor subunit

Distribution of the homologs in the orthogroup group_3690

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_3690

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q08633 2.45e-62 212 34 11 455 3 apxIIID RTX-III toxin determinant D Actinobacillus pleuropneumoniae
P18790 3.33e-62 212 32 8 457 1 ltxD Leukotoxin export protein LtxD Aggregatibacter actinomycetemcomitans
P55125 3.94e-60 206 32 13 483 3 lktD Leukotoxin secretion protein D Pasteurella haemolytica-like sp. (strain 5943B)
P09986 2.21e-58 202 31 8 457 1 hlyD Hemolysin secretion protein D, chromosomal Escherichia coli
P06739 2.61e-58 202 32 9 457 1 hlyD Hemolysin secretion protein D, plasmid Escherichia coli
P16534 9.98e-58 200 32 15 480 3 lktD Leukotoxin secretion protein D Mannheimia haemolytica
P26761 5.21e-55 193 31 12 467 3 apxID RTX-I toxin determinant D Actinobacillus pleuropneumoniae
P0DKX9 9.79e-35 137 23 6 454 3 cyaD Protein CyaD Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
J7QCA7 9.79e-35 137 23 6 454 3 cyaD Protein CyaD Bordetella pertussis (strain ATCC 9797 / DSM 5571 / CCUG 30873 / LMG 14455 / NCTC 10739 / 18323)
P23597 2.06e-15 81 22 10 427 3 prtE Proteases secretion protein PrtE Dickeya chrysanthemi
Q7ANN5 8.87e-15 79 22 13 447 1 prsE Type I secretion system membrane fusion protein PrsE Rhizobium meliloti (strain 1021)
Q03025 2.73e-14 78 20 7 434 3 aprE Alkaline protease secretion protein AprE Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9EXN6 1.31e-08 60 23 7 264 3 mchE Microcin H47 secretion protein MchE Escherichia coli
P22519 7.52e-08 58 23 6 243 1 cvaA Colicin V secretion protein CvaA Escherichia coli

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS10005
Feature type CDS
Gene -
Product HlyD family type I secretion periplasmic adaptor subunit
Location 2170131 - 2171495 (strand: 1)
Length 1365 (nucleotides) / 454 (amino acids)
In genomic island -

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_3690
Orthogroup size 3
N. genomes 2

Actions

Genomic region

Domains

PF13437 HlyD family secretion protein
PF13533 Biotin-lipoyl like

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1566 Defense mechanisms (V) V Multidrug resistance efflux pump EmrA

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K12532 membrane fusion protein, RTX toxin transport system Two-component system -

Protein Sequence

MMKSKIKQMIAHYFKTKKEPKNYDFYPNHIAVLEKPPTPYSRIIAIIISLSVIIFLLWAYIGKLDVLSSAIGKLVVSGYSQQIQIYEHSRLSAIHVKNGQQVTKGEALLTLDILGVDEEINNLKNKIENLLLLKIRYQALGQNTRPDTIDDFNLLNKEKKEAVLLSYQKEKDEFDASINHINSEIETNNKNKLLTHQEINSLNELKNNIEKRFNIKKKLYDKKIISTMEFLENKKELLEINQIIKRKSSELVILSSQEQQYIKNRDRLEKQKHLEWHDKFKQYESGVFIYQQNLYHVQKRQQLKIVRSPVTGTVQQLAVHTLGAVLQPSQAVMVIVPDTQHNVAEVNILNKDIGFIYPGQKAVIKIDAFPYTRYGTIEGTIVNIAKDSIQHEQLGLVYPVLIELDKQVMGEDEAQYKLATGMSLVADIKIEKRRVIDYLLSPIEVYQHEALREK

Flanking regions ( +/- flanking 50bp)

AGAAAAGATGGCGCTTATAAGAAACTTTGGCAACATCAACAAGGATAACAATGATGAAATCAAAAATAAAACAAATGATTGCTCACTACTTTAAAACTAAAAAAGAGCCTAAAAACTATGATTTTTACCCTAATCATATCGCCGTACTTGAGAAACCGCCGACACCTTATAGTCGTATTATTGCAATAATAATTTCATTAAGTGTGATTATATTTTTACTCTGGGCATATATAGGTAAATTAGATGTGCTTTCTTCAGCTATAGGAAAATTAGTGGTTTCAGGTTATTCGCAACAAATTCAAATTTATGAACATAGTCGCTTAAGCGCCATTCATGTAAAAAATGGCCAACAAGTTACCAAAGGAGAAGCGTTATTAACACTTGATATTTTAGGTGTTGATGAGGAGATTAATAATCTAAAAAATAAGATAGAAAATCTATTATTACTAAAAATTCGTTATCAAGCATTAGGTCAAAACACCCGACCTGATACAATTGATGATTTTAATTTACTAAATAAAGAAAAAAAAGAAGCGGTTCTATTAAGTTATCAAAAAGAAAAGGATGAATTTGATGCTAGTATTAATCATATTAATTCTGAAATAGAAACCAACAATAAAAACAAGCTTCTTACTCACCAAGAAATCAATTCATTAAATGAATTAAAAAACAATATTGAAAAACGCTTTAATATAAAGAAAAAACTCTATGATAAAAAAATTATTAGTACCATGGAGTTTTTAGAAAATAAAAAGGAGTTATTAGAAATTAATCAAATCATTAAAAGAAAATCATCAGAACTGGTTATTTTATCCAGTCAAGAGCAACAATATATAAAAAATCGCGATAGATTAGAAAAACAAAAACACCTAGAGTGGCATGACAAATTTAAACAATATGAAAGCGGAGTTTTTATTTATCAACAAAATCTTTATCATGTTCAGAAACGTCAACAATTAAAAATTGTTCGTTCTCCTGTTACAGGTACAGTACAACAACTCGCCGTTCATACCCTAGGAGCCGTATTGCAACCTTCACAAGCGGTGATGGTGATAGTGCCCGATACTCAGCATAATGTTGCTGAGGTGAATATTCTCAATAAAGATATTGGTTTTATCTATCCGGGTCAAAAAGCGGTGATTAAAATTGATGCTTTTCCTTATACCCGTTATGGCACCATTGAAGGCACCATTGTCAATATAGCAAAAGATTCCATACAACATGAACAATTAGGCTTAGTTTATCCCGTCCTGATTGAACTTGATAAGCAAGTGATGGGTGAAGATGAAGCACAATATAAACTGGCTACAGGTATGTCTTTAGTTGCCGATATAAAAATTGAAAAACGTCGAGTGATTGATTATTTACTCAGTCCAATAGAAGTTTATCAACATGAAGCATTAAGAGAAAAATAATAGCGAGATATCTATGAACTATATAACTAAAAATACGCCATCTCTTCATC