Homologs in group_2673

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_04875 FBDBKF_04875 77.8 Morganella morganii S1 emrA Multidrug resistance efflux pump EmrA
EHELCC_06165 EHELCC_06165 77.8 Morganella morganii S2 emrA Multidrug resistance efflux pump EmrA
NLDBIP_06485 NLDBIP_06485 77.8 Morganella morganii S4 emrA Multidrug resistance efflux pump EmrA
LHKJJB_03365 LHKJJB_03365 77.8 Morganella morganii S3 emrA Multidrug resistance efflux pump EmrA
HKOGLL_06840 HKOGLL_06840 77.8 Morganella morganii S5 emrA Multidrug resistance efflux pump EmrA

Distribution of the homologs in the orthogroup group_2673

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2673

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q9EXN6 0.0 587 64 0 422 3 mchE Microcin H47 secretion protein MchE Escherichia coli
P22519 0.0 563 63 0 411 1 cvaA Colicin V secretion protein CvaA Escherichia coli
P09986 3.54e-12 71 24 17 450 1 hlyD Hemolysin secretion protein D, chromosomal Escherichia coli
P16534 4.55e-08 58 23 13 334 3 lktD Leukotoxin secretion protein D Mannheimia haemolytica
P06739 2.09e-07 56 23 17 450 1 hlyD Hemolysin secretion protein D, plasmid Escherichia coli
P0DKX9 6.14e-07 55 21 14 406 3 cyaD Protein CyaD Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
J7QCA7 6.14e-07 55 21 14 406 3 cyaD Protein CyaD Bordetella pertussis (strain ATCC 9797 / DSM 5571 / CCUG 30873 / LMG 14455 / NCTC 10739 / 18323)
Q7ANN5 3.1e-06 52 22 8 278 1 prsE Type I secretion system membrane fusion protein PrsE Rhizobium meliloti (strain 1021)
P18790 0.001 45 22 10 289 1 ltxD Leukotoxin export protein LtxD Aggregatibacter actinomycetemcomitans

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS09475
Feature type CDS
Gene -
Product HlyD family secretion protein
Location 2001469 - 2002794 (strand: -1)
Length 1326 (nucleotides) / 441 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2673
Orthogroup size 6
N. genomes 6

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Genomic region

Domains

PF13437 HlyD family secretion protein

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1566 Defense mechanisms (V) V Multidrug resistance efflux pump EmrA

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K13408 membrane fusion protein Plant-pathogen interaction -

Protein Sequence

MFRQEALNNRKMKWQGKALLLPGIPLWIITVLCAVFLLSFLTFIISGSYTRQVNAIGEVSTYPRAVTVYAGVQGFITQQYVREGQSVKKNDPIYIIDINRATTSGVVSDNQRREIQNQLQRITDMIARLDENKQTTLAALEKQKNLYIDAHARSVGIINRAEEGIRIMKQNMDNYRGYREKGLINKDQWLNQVALYYSQQNSLLGLGGQNEQNALQITALEGQIFSQAAEFDNRIYQMELQRFELQKEQVNNDAGSEIVVRALTDGRVDSLGVTVGQMVNPGDTLLQILPEDASRYRLVLWVPDDALPWLRVGDAVNIRYDAFPAEKFGLFAAVIHVISTAPASPQEMMTYAGAPKDYQVQSVPYYKVIVHPEKERITYDGRELSLQNGMKVQTTFFLEKRKIYQWMVSPFYNMKQSASEPVTPSEDTVISPGLSADRGAV

Flanking regions ( +/- flanking 50bp)

GCTAATACTAAATATCTGAATAACCTGATGCCGACAGGCAGAGGCCGATATTGTTCCGGCAGGAAGCACTTAATAACAGAAAAATGAAATGGCAGGGAAAAGCCCTGTTATTACCCGGTATTCCGCTTTGGATAATTACTGTTCTCTGTGCGGTATTCTTGCTCTCTTTTCTGACCTTCATTATTTCAGGCTCTTACACCCGCCAGGTGAATGCCATCGGCGAGGTTTCCACTTACCCGCGCGCCGTCACCGTTTATGCAGGTGTACAGGGATTTATTACGCAGCAATATGTCCGCGAAGGACAGTCTGTTAAAAAAAATGATCCCATTTATATTATTGATATTAACAGAGCGACAACCAGCGGCGTGGTGAGTGACAACCAGCGGCGTGAAATACAAAATCAGTTACAACGTATCACAGACATGATAGCCCGCCTTGACGAAAATAAACAGACCACACTGGCCGCACTGGAGAAACAAAAAAATCTCTATATTGATGCCCATGCCCGTTCTGTCGGTATTATTAATCGGGCCGAAGAAGGGATCCGTATTATGAAACAGAATATGGATAATTATCGCGGCTACCGGGAAAAAGGGCTGATAAATAAAGACCAGTGGCTTAATCAGGTTGCACTTTATTACTCACAACAAAACAGTTTGCTGGGACTGGGCGGACAAAATGAACAAAATGCCCTGCAGATTACCGCTCTGGAAGGGCAGATATTCAGTCAGGCCGCCGAATTTGATAACCGGATTTATCAGATGGAATTACAGCGGTTTGAGTTACAAAAAGAGCAGGTAAATAATGATGCCGGCAGCGAAATTGTTGTGCGGGCACTGACGGACGGACGGGTGGATTCTCTGGGCGTGACGGTTGGTCAGATGGTCAATCCCGGTGACACATTGCTGCAGATTTTACCGGAAGATGCCAGCCGGTACCGGCTGGTGCTCTGGGTTCCGGATGATGCTCTGCCCTGGCTGAGAGTCGGTGATGCCGTCAATATCCGCTATGACGCGTTTCCGGCTGAAAAATTCGGGCTGTTTGCTGCGGTGATCCACGTTATTTCCACGGCACCCGCTTCCCCGCAGGAAATGATGACGTATGCGGGGGCGCCGAAAGATTATCAGGTTCAGTCAGTTCCTTATTACAAAGTCATCGTGCATCCGGAAAAGGAACGGATCACTTATGACGGGCGTGAACTGAGCCTGCAAAACGGAATGAAAGTACAAACGACATTTTTTCTGGAAAAACGGAAAATTTATCAGTGGATGGTGTCGCCTTTTTATAACATGAAACAAAGTGCCTCTGAGCCGGTGACACCCTCAGAAGACACTGTTATTTCTCCCGGTTTGTCAGCTGACAGGGGAGCCGTATGAGCCGTTTATCCATCAAAAGTATCATTGAAAAGCTTGATATTACGCTCCTC