COG1278


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1278, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 48 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Cold shock protein, CspA family
Function(s) descr. Transcription (K)

Occurence in the database

COG1278 is associated with 48 different proteins (see tab "Protein list" and "Profile")
The 48 proteins are classified into 4 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_0 FBDBKF_00180 30347 30559 -1 cspC Cold shock protein, CspA family Morganella morganii S1
1 group_0 FBDBKF_00840 153554 153766 -1 cspE transcription antiterminator/RNA stability regulator CspE Morganella morganii S1
2 group_1212 FBDBKF_07055 75616 75846 -1 cspD cold shock domain-containing protein CspD Morganella morganii S1
3 group_1234 FBDBKF_07185 112063 112278 1 cspC Cold shock protein, CspA family Morganella morganii S1
4 group_0 FBDBKF_10120 116294 116503 -1 cspE transcription antiterminator/RNA stability regulator CspE Morganella morganii S1
5 group_3700 FBDBKF_12480 14766 15245 -1 cspC Cold shock protein, CspA family Morganella morganii S1
6 group_0 FBDBKF_12525 21034 21246 -1 cspC Cold shock protein, CspA family Morganella morganii S1
7 group_0 FBDBKF_16430 10383 10592 1 cspE transcription antiterminator/RNA stability regulator CspE Morganella morganii S1
8 group_0 EHELCC_00705 155102 155314 1 cspE transcription antiterminator/RNA stability regulator CspE Morganella morganii S2
9 group_0 EHELCC_01365 278309 278521 1 cspC Cold shock protein, CspA family Morganella morganii S2
10 group_1234 EHELCC_03785 73908 74123 -1 cspC Cold shock protein, CspA family Morganella morganii S2
11 group_1212 EHELCC_03915 110340 110570 1 cspD cold shock domain-containing protein CspD Morganella morganii S2
12 group_0 EHELCC_04920 308259 308468 -1 cspE transcription antiterminator/RNA stability regulator CspE Morganella morganii S2
13 group_0 EHELCC_08295 127369 127578 1 cspE transcription antiterminator/RNA stability regulator CspE Morganella morganii S2
14 group_0 NLDBIP_02095 401615 401827 -1 cspC Cold shock protein, CspA family Morganella morganii S4
15 group_0 NLDBIP_02755 524822 525034 -1 cspE transcription antiterminator/RNA stability regulator CspE Morganella morganii S4
16 group_1234 NLDBIP_03785 73704 73919 -1 cspC Cold shock protein, CspA family Morganella morganii S4
17 group_1212 NLDBIP_03915 110136 110366 1 cspD cold shock domain-containing protein CspD Morganella morganii S4
18 group_0 NLDBIP_04920 308055 308264 -1 cspE transcription antiterminator/RNA stability regulator CspE Morganella morganii S4
19 group_0 NLDBIP_08620 127369 127578 1 cspE transcription antiterminator/RNA stability regulator CspE Morganella morganii S4
20 group_0 LHKJJB_03610 8856 9068 -1 cspC Cold shock protein, CspA family Morganella morganii S3
21 group_0 LHKJJB_04270 132063 132275 -1 cspE transcription antiterminator/RNA stability regulator CspE Morganella morganii S3
22 group_0 LHKJJB_05645 129581 129790 -1 cspE transcription antiterminator/RNA stability regulator CspE Morganella morganii S3
23 group_1234 LHKJJB_09615 73818 74033 -1 cspC Cold shock protein, CspA family Morganella morganii S3
24 group_1212 LHKJJB_09745 110250 110480 1 cspD cold shock domain-containing protein CspD Morganella morganii S3
25 group_0 LHKJJB_13710 27114 27323 1 cspE transcription antiterminator/RNA stability regulator CspE Morganella morganii S3
26 group_0 HKOGLL_02775 155307 155519 1 cspE transcription antiterminator/RNA stability regulator CspE Morganella morganii S5
27 group_0 HKOGLL_03435 278514 278726 1 cspC Cold shock protein, CspA family Morganella morganii S5
28 group_0 HKOGLL_05270 111960 112169 1 cspE transcription antiterminator/RNA stability regulator CspE Morganella morganii S5
29 group_1212 HKOGLL_09230 80572 80802 -1 cspD cold shock domain-containing protein CspD Morganella morganii S5
30 group_1234 HKOGLL_09360 117019 117234 1 cspC Cold shock protein, CspA family Morganella morganii S5
31 group_0 HKOGLL_12825 117075 117284 -1 cspE transcription antiterminator/RNA stability regulator CspE Morganella morganii S5
32 group_0 F4V73_RS00215 54846 55055 1 cspE transcription antiterminator/RNA stability regulator CspE Morganella psychrotolerans
33 group_1212 F4V73_RS01240 263444 263671 -1 cspD cold shock domain-containing protein CspD Morganella psychrotolerans
34 group_1234 F4V73_RS01370 300329 300544 1 cold shock domain-containing protein Morganella psychrotolerans
35 group_0 F4V73_RS02950 625728 625937 1 cspE transcription antiterminator/RNA stability regulator CspE Morganella psychrotolerans
36 group_0 F4V73_RS06830 1418483 1418695 -1 cspE transcription antiterminator/RNA stability regulator CspE Morganella psychrotolerans
37 group_0 F4V73_RS07335 1531285 1531497 -1 cspA RNA chaperone/antiterminator CspA Morganella psychrotolerans
38 group_0 F4V73_RS07755 1620151 1620363 -1 cold-shock protein Morganella psychrotolerans
39 group_3700 F4V73_RS12560 106027 106509 -1 cold shock domain-containing protein Morganella psychrotolerans
40 group_0 PMI_RS02060 486347 486556 1 cspE transcription antiterminator/RNA stability regulator CspE Proteus mirabilis HI4320
41 group_1212 PMI_RS03385 748339 748548 -1 cspD cold shock domain-containing protein CspD Proteus mirabilis HI4320
42 group_1234 PMI_RS03540 791810 792025 1 cold shock domain-containing protein Proteus mirabilis HI4320
43 group_0 PMI_RS03965 893546 893758 1 cold-shock protein Proteus mirabilis HI4320
44 group_0 PMI_RS04480 996178 996390 1 cold-shock protein Proteus mirabilis HI4320
45 group_0 PMI_RS04745 1045600 1045812 1 cspA RNA chaperone/antiterminator CspA Proteus mirabilis HI4320
46 group_0 PMI_RS08180 1789840 1790052 -1 cspE transcription antiterminator/RNA stability regulator CspE Proteus mirabilis HI4320
47 group_3700 PMI_RS14755 3273903 3274379 -1 cold shock domain-containing protein Proteus mirabilis HI4320