Homologs in group_4

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22 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_08985 FBDBKF_08985 43.9 Morganella morganii S1 - Outer membrane usher protein
FBDBKF_09035 FBDBKF_09035 43.0 Morganella morganii S1 fimD Outer membrane usher protein FimD/PapC
FBDBKF_18155 FBDBKF_18155 100.0 Morganella morganii S1 fimD Outer membrane usher protein FimD/PapC
EHELCC_10375 EHELCC_10375 43.0 Morganella morganii S2 fimD Outer membrane usher protein FimD/PapC
EHELCC_10425 EHELCC_10425 43.9 Morganella morganii S2 - Outer membrane usher protein
EHELCC_16855 EHELCC_16855 100.0 Morganella morganii S2 fimD Outer membrane usher protein FimD/PapC
NLDBIP_10720 NLDBIP_10720 43.0 Morganella morganii S4 fimD Outer membrane usher protein FimD/PapC
NLDBIP_10770 NLDBIP_10770 43.9 Morganella morganii S4 - Outer membrane usher protein
LHKJJB_10585 LHKJJB_10585 43.9 Morganella morganii S3 - Outer membrane usher protein
LHKJJB_10635 LHKJJB_10635 43.0 Morganella morganii S3 fimD Outer membrane usher protein FimD/PapC
LHKJJB_17515 LHKJJB_17515 100.0 Morganella morganii S3 fimD Outer membrane usher protein FimD/PapC
HKOGLL_13645 HKOGLL_13645 43.9 Morganella morganii S5 - Outer membrane usher protein
HKOGLL_13695 HKOGLL_13695 43.0 Morganella morganii S5 fimD Outer membrane usher protein FimD/PapC
HKOGLL_17330 HKOGLL_17330 100.0 Morganella morganii S5 fimD Outer membrane usher protein FimD/PapC
F4V73_RS10360 F4V73_RS10360 80.0 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS10935 F4V73_RS10935 41.8 Morganella psychrotolerans - outer membrane usher protein
F4V73_RS10980 F4V73_RS10980 42.5 Morganella psychrotolerans - outer membrane usher protein
PMI_RS01235 PMI_RS01235 42.0 Proteus mirabilis HI4320 - outer membrane usher protein
PMI_RS01285 PMI_RS01285 45.6 Proteus mirabilis HI4320 mrpC MR/P fimbria usher protein MrpC
PMI_RS01440 PMI_RS01440 37.4 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS09270 PMI_RS09270 36.6 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS10945 PMI_RS10945 35.7 Proteus mirabilis HI4320 - PapC/FimD family outer membrane usher protein

Distribution of the homologs in the orthogroup group_4

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_4

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P77196 0.0 649 38 8 845 5 yfcU Putative outer membrane usher protein YfcU Escherichia coli (strain K12)
P53514 6.66e-180 541 36 18 835 3 pmfC Outer membrane usher protein PmfC Proteus mirabilis (strain HI4320)
P07110 6.08e-177 533 36 14 850 1 papC Outer membrane usher protein PapC Escherichia coli
P76655 8.99e-160 489 35 18 832 5 yqiG Putative outer membrane usher protein YqiG Escherichia coli (strain K12)
P75750 3.14e-147 456 33 17 836 3 ybgQ Uncharacterized outer membrane usher protein YbgQ Escherichia coli (strain K12)
P30130 4.16e-84 290 28 29 870 1 fimD Outer membrane usher protein FimD Escherichia coli (strain K12)
P46009 2.17e-72 258 26 33 889 3 focD Outer membrane usher protein FocD Escherichia coli
P37924 3.63e-72 257 27 27 845 3 fimD Outer membrane usher protein FimD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P33129 6.7e-71 253 26 27 846 1 htrE Outer membrane usher protein HtrE Escherichia coli (strain K12)
P43662 1.74e-68 246 26 29 858 3 lpfC Outer membrane usher protein LpfC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P77468 1.89e-68 246 26 28 862 2 sfmD Outer membrane usher protein SfmD Escherichia coli (strain K12)
P42915 4.57e-68 245 27 26 813 2 yraJ Outer membrane usher protein YraJ Escherichia coli (strain K12)
P53517 1.22e-67 244 26 28 872 3 afaC Outer membrane usher protein AfaC Escherichia coli
Q8XDD1 5.89e-62 228 24 27 856 2 elfC Probable outer membrane usher protein ElfC Escherichia coli O157:H7
P75857 1.16e-61 227 24 26 838 2 elfC Probable outer membrane usher protein ElfC Escherichia coli (strain K12)
P33408 1.04e-60 224 24 23 807 3 myfC Outer membrane usher protein MyfC Yersinia enterocolitica
Q56983 6.34e-59 219 25 26 849 3 psaC Outer membrane usher protein PsaC Yersinia pseudotuberculosis serotype I (strain IP32953)
P31527 6.34e-59 219 25 26 849 3 psaC Outer membrane usher protein PsaC Yersinia pestis
P46005 2.69e-55 208 25 26 844 3 aggC Outer membrane usher protein AggC Escherichia coli
P33397 2e-54 206 27 26 825 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P33388 2.64e-54 205 25 24 799 3 sefC Outer membrane usher protein SefC Salmonella enteritidis
P21647 4.25e-54 204 26 30 828 3 mrkC Outer membrane usher protein MrkC Klebsiella pneumoniae
P45997 1.34e-53 203 26 25 816 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P26949 7.59e-53 201 24 29 854 1 caf1A F1 capsule-anchoring protein Yersinia pestis
P45998 2.8e-50 193 26 27 815 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P46000 2.95e-50 193 27 21 739 3 fasD Outer membrane usher protein FasD Escherichia coli
P53513 1.64e-49 191 24 28 819 3 cssD Outer membrane usher protein CssD Escherichia coli
P53512 8.09e-49 189 24 29 817 3 cssD Outer membrane usher protein CssD Escherichia coli
P33341 1.28e-43 173 24 29 858 2 yehB Outer membrane usher protein YehB Escherichia coli (strain K12)
P15484 1.5e-42 171 24 25 719 3 None Outer membrane usher protein CS3-2 Escherichia coli
P12050 6.84e-41 164 25 32 800 3 fanD Outer membrane usher protein FanD Escherichia coli
P33410 1.39e-38 158 22 23 830 3 fimC Outer membrane usher protein FimC Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
P37868 1.82e-34 145 23 28 827 3 pefC Outer membrane usher protein PefC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q8X5K7 8.27e-34 137 28 11 367 2 lpfC Probable outer membrane usher protein LpfC Escherichia coli O157:H7
P06970 1.05e-31 136 25 14 513 3 faeD Outer membrane usher protein FaeD Escherichia coli
Q8X5K8 2.76e-29 126 24 17 497 2 lpfC' Probable outer membrane usher protein LpfC' Escherichia coli O157:H7
P45420 1.12e-22 107 22 34 829 3 yhcD Uncharacterized outer membrane usher protein YhcD Escherichia coli (strain K12)
Q7DBJ9 3.97e-16 84 30 11 285 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli O157:H7
P76137 1.44e-13 77 29 11 285 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Morganella morganii S4
Locus tag NLDBIP_17595
Feature type CDS
Gene fimD
Product Outer membrane usher protein FimD/PapC
Location 22574 - 25072 (strand: 1)
Length 2499 (nucleotides) / 832 (amino acids)

Contig

Accession ZDB_537
Length 55765 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_4
Orthogroup size 23
N. genomes 7

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Genomic region

Domains

PF00577 Outer membrane usher protein
PF13953 PapC C-terminal domain
PF13954 PapC N-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3188 Cell motility (N)
Extracellular structures (W)		 NW Outer membrane usher protein FimD/PapC

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K12518 outer membrane usher protein PapC - -

Protein Sequence

MKLRTTIKIFTASVVAVIQINTAFAEEAINFNTSFLDSDSQEIDFSKFSRANYVMPGTYLLATKLNNNVITSDENILFYIPEYDPEITVPCITPELFAQLAMKEEWQNKVSWTAQDKLQCLDIRTIPDMQATGDIADNKLNIRIPQAYMAYSDPSWDPPERWDDGIAGFLFDYNATATHSKYQPGSDNDKSSKTDVVSYGDTGVNLGAWRVRAEWQATGGDSAEHSKRWRWNQIYAYRALRDLSARLIFGEQYLTSELFESFRYIGMSMETDENMFPPLLRGYAPEVAGVARTNATVIIRRGERIIYQEQVSKGPFRIRDMNYIGDGTLNVTIKEQDGSEQHFTIETSRLSMLTRPGQFLFKLAAGKPLSDDHKTEGPEFGTGSFSRGMSNNTTLFGGVLAATDYQNVSFGIGRDIAPFGVFSAKVSYSRANMGDFADKQNKTGGSYSITYSKEFDAINSQLTFAGYRFSERDYMTMNQFVDLRYRGGNTDNSKEMYNIIFNKVFPSLRMNVYLNYSHQTFWNKAGINNYSMTLSRNFDWGEKKNLSMSMSAYRTESDSTKDNGVYASLSVPLGDNKGMFSYSGSYNKNSHSNNVNYYTDIDNSSNYSLSAGEGDGKVNLAGFYTNEGGNNYLSLSGTYIQDNVLTVSGQSRGGFTLTREGAAFHRSGNSMAPRILVDTSGTPDIDVRGTGKAVRSNAFGKAIIPTATAYSRGQLSLDLDAMPDNAEALTSVQQATLTSGAIGYRKFNVVEGYKIMGIIAMNDNTHPPFGASVMNDKNAEIGIVADNGSAYLTGIQPGQKLTVAWNGQTQCTVRIPEIKDDNVQFNMLLPCR

Flanking regions ( +/- flanking 50bp)

AGGACAGCTCCCGCCACTGCATAATAGATTAGCGGTGGCTGGCATATCTCATGAAGCTCAGAACAACAATTAAAATATTTACAGCTTCTGTGGTTGCAGTTATTCAGATAAATACCGCATTTGCTGAAGAAGCCATTAACTTTAATACATCATTTTTAGACTCAGACAGTCAGGAAATTGATTTTTCAAAATTCAGCCGGGCTAATTATGTTATGCCGGGTACTTATCTTCTGGCAACTAAACTCAATAATAATGTTATTACCAGTGATGAGAATATCCTTTTTTATATCCCGGAATATGATCCTGAAATAACAGTCCCCTGTATTACCCCTGAATTATTTGCACAACTTGCCATGAAAGAAGAGTGGCAGAATAAAGTCAGCTGGACAGCGCAGGATAAATTGCAGTGCCTTGATATCCGTACCATTCCTGATATGCAGGCAACGGGTGATATCGCGGATAATAAACTCAATATCCGGATCCCCCAGGCCTATATGGCCTACAGCGATCCGTCATGGGATCCGCCGGAGCGCTGGGATGACGGTATCGCCGGATTTTTATTCGACTATAACGCCACCGCCACGCACAGCAAATACCAGCCGGGCAGTGATAACGATAAAAGCAGCAAGACGGATGTAGTCAGCTACGGTGATACCGGCGTCAACCTCGGTGCATGGCGTGTGCGTGCGGAATGGCAGGCGACCGGCGGCGACAGCGCGGAGCACTCAAAACGCTGGCGCTGGAACCAGATCTACGCTTACCGGGCACTCCGGGATCTCAGCGCCCGTCTGATATTCGGTGAACAGTATCTGACCTCAGAACTGTTTGAAAGCTTCCGCTACATCGGCATGAGCATGGAAACCGATGAAAATATGTTCCCGCCGCTGCTGCGCGGTTATGCGCCGGAAGTTGCCGGGGTTGCCCGCACCAACGCCACCGTGATCATCCGCCGGGGTGAACGTATCATTTATCAGGAGCAGGTCAGTAAAGGGCCGTTCCGTATCCGTGATATGAACTACATCGGTGACGGTACACTGAATGTCACCATTAAAGAGCAGGATGGCAGCGAACAGCATTTCACCATCGAAACATCCCGCCTGTCGATGCTGACCCGTCCCGGCCAGTTCCTGTTTAAACTGGCGGCCGGTAAACCGCTGTCAGACGATCACAAAACCGAAGGCCCGGAATTCGGTACAGGGAGTTTTTCCCGGGGGATGAGCAACAACACCACGCTGTTCGGCGGCGTACTGGCGGCGACGGATTACCAGAACGTGTCTTTCGGGATAGGCCGGGATATCGCACCATTCGGGGTATTTTCCGCGAAAGTCTCCTATTCCCGGGCAAACATGGGTGATTTTGCAGATAAACAGAATAAAACCGGCGGCTCTTACAGCATCACCTATTCCAAGGAATTCGATGCCATTAACAGTCAGCTGACCTTCGCCGGTTACCGCTTCTCAGAGCGGGATTACATGACCATGAACCAGTTTGTCGATCTGCGTTACCGCGGCGGTAATACCGACAACAGCAAAGAGATGTATAACATCATCTTTAACAAGGTGTTCCCGTCTCTGCGCATGAACGTCTATCTGAACTACAGTCATCAGACATTCTGGAATAAAGCGGGCATCAATAACTACAGCATGACCCTCTCCCGCAACTTTGACTGGGGAGAGAAAAAGAACCTCAGCATGAGTATGTCAGCCTACCGGACAGAATCGGATTCAACAAAAGATAACGGCGTCTACGCCAGCCTCTCTGTTCCGCTCGGTGACAATAAAGGCATGTTCAGCTACAGCGGCAGTTACAATAAGAACTCTCACAGTAATAACGTTAACTATTACACAGATATTGATAACTCGAGTAACTATTCACTGTCTGCCGGTGAAGGCGACGGCAAAGTCAACCTGGCCGGTTTCTATACCAATGAAGGGGGGAATAACTACCTTTCACTGAGCGGAACCTATATTCAGGACAACGTTCTTACGGTATCCGGCCAGTCACGCGGCGGCTTTACCCTGACCCGTGAAGGTGCGGCATTCCACCGCAGCGGCAACAGTATGGCACCGCGCATTCTGGTGGATACCAGCGGCACACCGGACATTGATGTGCGCGGTACCGGCAAAGCGGTGCGGAGTAACGCCTTCGGGAAAGCGATTATCCCGACCGCGACGGCCTACTCACGCGGCCAGCTGTCTCTTGATCTCGATGCCATGCCGGATAATGCCGAAGCCCTGACATCCGTGCAGCAGGCAACACTGACCTCCGGCGCGATCGGTTACCGGAAATTTAATGTTGTCGAAGGCTATAAAATCATGGGTATTATTGCTATGAATGATAATACTCATCCGCCATTCGGCGCCTCTGTCATGAATGACAAAAATGCGGAGATCGGCATTGTGGCCGATAACGGATCGGCTTATCTGACCGGGATACAACCGGGCCAGAAGCTGACTGTAGCCTGGAACGGACAGACACAATGTACTGTCCGGATCCCGGAAATAAAGGATGATAACGTTCAGTTTAATATGCTGCTGCCATGCCGGTAAATCCGGCGGCACCGGTATGTATTTTACAGAATTAACAGATGAATCCGTAA