Orthogroup:group_4


Homologs in group_4

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23 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_08985 FBDBKF_08985 Morganella morganii S1 - Outer membrane usher protein
FBDBKF_09035 FBDBKF_09035 Morganella morganii S1 fimD Outer membrane usher protein FimD/PapC
FBDBKF_18155 FBDBKF_18155 Morganella morganii S1 fimD Outer membrane usher protein FimD/PapC
EHELCC_10375 EHELCC_10375 Morganella morganii S2 fimD Outer membrane usher protein FimD/PapC
EHELCC_10425 EHELCC_10425 Morganella morganii S2 - Outer membrane usher protein
EHELCC_16855 EHELCC_16855 Morganella morganii S2 fimD Outer membrane usher protein FimD/PapC
NLDBIP_10720 NLDBIP_10720 Morganella morganii S4 fimD Outer membrane usher protein FimD/PapC
NLDBIP_10770 NLDBIP_10770 Morganella morganii S4 - Outer membrane usher protein
NLDBIP_17595 NLDBIP_17595 Morganella morganii S4 fimD Outer membrane usher protein FimD/PapC
LHKJJB_10585 LHKJJB_10585 Morganella morganii S3 - Outer membrane usher protein
LHKJJB_10635 LHKJJB_10635 Morganella morganii S3 fimD Outer membrane usher protein FimD/PapC
LHKJJB_17515 LHKJJB_17515 Morganella morganii S3 fimD Outer membrane usher protein FimD/PapC
HKOGLL_13645 HKOGLL_13645 Morganella morganii S5 - Outer membrane usher protein
HKOGLL_13695 HKOGLL_13695 Morganella morganii S5 fimD Outer membrane usher protein FimD/PapC
HKOGLL_17330 HKOGLL_17330 Morganella morganii S5 fimD Outer membrane usher protein FimD/PapC
F4V73_RS10360 F4V73_RS10360 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS10935 F4V73_RS10935 Morganella psychrotolerans - outer membrane usher protein
F4V73_RS10980 F4V73_RS10980 Morganella psychrotolerans - outer membrane usher protein
PMI_RS01235 PMI_RS01235 Proteus mirabilis HI4320 - outer membrane usher protein
PMI_RS01285 PMI_RS01285 Proteus mirabilis HI4320 mrpC MR/P fimbria usher protein MrpC
PMI_RS01440 PMI_RS01440 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS09270 PMI_RS09270 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS10945 PMI_RS10945 Proteus mirabilis HI4320 - PapC/FimD family outer membrane usher protein

Distribution of group_4 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_4 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_4

Orthogroup content: 23 members

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This page summarizes the annotation of all members of the orthologous group group_4.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 - 12
2 fimD 10
3 mrpC 1

Product

# Product Occurence
1 Outer membrane usher protein 5
2 Outer membrane usher protein FimD/PapC 10
3 fimbria/pilus outer membrane usher protein 3
4 outer membrane usher protein 3
5 MR/P fimbria usher protein MrpC 1
6 PapC/FimD family outer membrane usher protein 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG3188 23 NW Cell motility (N)
Extracellular structures (W)		 Outer membrane usher protein FimD/PapC

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K12518 23 outer membrane usher protein PapC - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00577 23 Outer membrane usher protein
PF13953 23 PapC C-terminal domain
PF13954 23 PapC N-terminal domain

Virulence factor Annotation(s)

VF gene ID Occurences Protein VF ID Category
VFG042611 1 fimbria/pilus outer membrane usher protein VF1236 Adherence
VFG042623 8 MR/P fimbria usher protein MrpC VF1233 Adherence

Annotations of the 39 SwissProt hits

Annotation Number of occurrences
F1 capsule-anchoring protein 1
Fimbrial usher domain-containing protein YdeT 2
Outer membrane usher protein AfaC 1
Outer membrane usher protein AggC 1
Outer membrane usher protein CS3-2 1
Outer membrane usher protein CssD 2
Outer membrane usher protein FaeD 1
Outer membrane usher protein FanD 1
Outer membrane usher protein FasD 1
Outer membrane usher protein FimC 1
Outer membrane usher protein FimD 2
Outer membrane usher protein FocD 1
Outer membrane usher protein HifC 3
Outer membrane usher protein HtrE 1
Outer membrane usher protein LpfC 1
Outer membrane usher protein MrkC 1
Outer membrane usher protein MyfC 1
Outer membrane usher protein PapC 1
Outer membrane usher protein PefC 1
Outer membrane usher protein PmfC 1
Outer membrane usher protein PsaC 2
Outer membrane usher protein SefC 1
Outer membrane usher protein SfmD 1
Outer membrane usher protein YehB 1
Outer membrane usher protein YraJ 1
Probable outer membrane usher protein ElfC 2
Probable outer membrane usher protein LpfC 1
Probable outer membrane usher protein LpfC' 1
Putative outer membrane usher protein YfcU 1
Putative outer membrane usher protein YqiG 1
Uncharacterized outer membrane usher protein YbgQ 1
Uncharacterized outer membrane usher protein YhcD 1

Protein length

Min length 828
Max length 890
Mean length (sd) 860.6 (23.6)
Median length 871.0

Protein length distribution