Homologs in group_4

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22 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_08985 FBDBKF_08985 52.9 Morganella morganii S1 - Outer membrane usher protein
FBDBKF_09035 FBDBKF_09035 100.0 Morganella morganii S1 fimD Outer membrane usher protein FimD/PapC
FBDBKF_18155 FBDBKF_18155 43.0 Morganella morganii S1 fimD Outer membrane usher protein FimD/PapC
EHELCC_10375 EHELCC_10375 100.0 Morganella morganii S2 fimD Outer membrane usher protein FimD/PapC
EHELCC_10425 EHELCC_10425 52.9 Morganella morganii S2 - Outer membrane usher protein
EHELCC_16855 EHELCC_16855 43.0 Morganella morganii S2 fimD Outer membrane usher protein FimD/PapC
NLDBIP_10770 NLDBIP_10770 52.9 Morganella morganii S4 - Outer membrane usher protein
NLDBIP_17595 NLDBIP_17595 43.0 Morganella morganii S4 fimD Outer membrane usher protein FimD/PapC
LHKJJB_10585 LHKJJB_10585 52.9 Morganella morganii S3 - Outer membrane usher protein
LHKJJB_10635 LHKJJB_10635 100.0 Morganella morganii S3 fimD Outer membrane usher protein FimD/PapC
LHKJJB_17515 LHKJJB_17515 43.0 Morganella morganii S3 fimD Outer membrane usher protein FimD/PapC
HKOGLL_13645 HKOGLL_13645 52.9 Morganella morganii S5 - Outer membrane usher protein
HKOGLL_13695 HKOGLL_13695 100.0 Morganella morganii S5 fimD Outer membrane usher protein FimD/PapC
HKOGLL_17330 HKOGLL_17330 43.0 Morganella morganii S5 fimD Outer membrane usher protein FimD/PapC
F4V73_RS10360 F4V73_RS10360 41.8 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS10935 F4V73_RS10935 87.3 Morganella psychrotolerans - outer membrane usher protein
F4V73_RS10980 F4V73_RS10980 51.6 Morganella psychrotolerans - outer membrane usher protein
PMI_RS01235 PMI_RS01235 61.1 Proteus mirabilis HI4320 - outer membrane usher protein
PMI_RS01285 PMI_RS01285 69.7 Proteus mirabilis HI4320 mrpC MR/P fimbria usher protein MrpC
PMI_RS01440 PMI_RS01440 40.5 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS09270 PMI_RS09270 41.0 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS10945 PMI_RS10945 45.2 Proteus mirabilis HI4320 - PapC/FimD family outer membrane usher protein

Distribution of the homologs in the orthogroup group_4

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_4

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P77196 0.0 840 48 8 867 5 yfcU Putative outer membrane usher protein YfcU Escherichia coli (strain K12)
P07110 0.0 703 44 9 811 1 papC Outer membrane usher protein PapC Escherichia coli
P53514 0.0 638 41 13 827 3 pmfC Outer membrane usher protein PmfC Proteus mirabilis (strain HI4320)
P76655 0.0 577 39 10 792 5 yqiG Putative outer membrane usher protein YqiG Escherichia coli (strain K12)
P75750 8.91e-176 531 38 13 816 3 ybgQ Uncharacterized outer membrane usher protein YbgQ Escherichia coli (strain K12)
P46009 1.58e-100 336 30 28 875 3 focD Outer membrane usher protein FocD Escherichia coli
P30130 8.22e-90 307 29 28 884 1 fimD Outer membrane usher protein FimD Escherichia coli (strain K12)
Q8XDD1 4.78e-85 294 29 25 817 2 elfC Probable outer membrane usher protein ElfC Escherichia coli O157:H7
P75857 4.39e-84 291 29 25 807 2 elfC Probable outer membrane usher protein ElfC Escherichia coli (strain K12)
P37924 8.05e-83 288 29 24 865 3 fimD Outer membrane usher protein FimD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P33129 1.04e-82 287 30 26 815 1 htrE Outer membrane usher protein HtrE Escherichia coli (strain K12)
P42915 6.89e-82 285 28 26 853 2 yraJ Outer membrane usher protein YraJ Escherichia coli (strain K12)
P43662 1.96e-80 280 28 30 855 3 lpfC Outer membrane usher protein LpfC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P77468 6.01e-78 274 28 28 892 2 sfmD Outer membrane usher protein SfmD Escherichia coli (strain K12)
P53517 3.24e-65 238 27 31 855 3 afaC Outer membrane usher protein AfaC Escherichia coli
Q56983 5.91e-65 237 26 27 868 3 psaC Outer membrane usher protein PsaC Yersinia pseudotuberculosis serotype I (strain IP32953)
P31527 5.91e-65 237 26 27 868 3 psaC Outer membrane usher protein PsaC Yersinia pestis
P33341 8.72e-65 236 26 24 825 2 yehB Outer membrane usher protein YehB Escherichia coli (strain K12)
P46000 6e-64 234 27 26 835 3 fasD Outer membrane usher protein FasD Escherichia coli
P33397 1.82e-62 230 28 22 775 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P45997 3.28e-62 229 28 22 774 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P33408 4.25e-62 229 26 27 799 3 myfC Outer membrane usher protein MyfC Yersinia enterocolitica
P21647 5.75e-62 228 27 29 838 3 mrkC Outer membrane usher protein MrkC Klebsiella pneumoniae
P45998 1.01e-59 222 27 23 777 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P37868 1.27e-57 215 26 22 755 3 pefC Outer membrane usher protein PefC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P33388 2.34e-54 206 24 25 782 3 sefC Outer membrane usher protein SefC Salmonella enteritidis
P26949 1.14e-51 198 24 24 853 1 caf1A F1 capsule-anchoring protein Yersinia pestis
P46005 2.42e-46 182 26 24 807 3 aggC Outer membrane usher protein AggC Escherichia coli
P53513 2.7e-44 176 23 20 722 3 cssD Outer membrane usher protein CssD Escherichia coli
P53512 4.09e-43 172 23 19 722 3 cssD Outer membrane usher protein CssD Escherichia coli
P15484 6.85e-43 172 26 27 674 3 None Outer membrane usher protein CS3-2 Escherichia coli
P33410 5.94e-42 169 24 31 880 3 fimC Outer membrane usher protein FimC Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
P12050 3.85e-41 166 24 24 755 3 fanD Outer membrane usher protein FanD Escherichia coli
Q8X5K7 4.25e-39 152 30 10 372 2 lpfC Probable outer membrane usher protein LpfC Escherichia coli O157:H7
Q8X5K8 3.84e-37 149 28 13 476 2 lpfC' Probable outer membrane usher protein LpfC' Escherichia coli O157:H7
P45420 2.62e-35 147 24 35 809 3 yhcD Uncharacterized outer membrane usher protein YhcD Escherichia coli (strain K12)
P06970 3.81e-28 125 27 14 420 3 faeD Outer membrane usher protein FaeD Escherichia coli
Q7DBJ9 1.34e-15 83 25 13 355 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli O157:H7
P76137 2.11e-14 79 25 12 355 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Morganella morganii S4
Locus tag NLDBIP_10720
Feature type CDS
Gene fimD
Product Outer membrane usher protein FimD/PapC
Location 101109 - 103766 (strand: 1)
Length 2658 (nucleotides) / 885 (amino acids)

Contig

Accession ZDB_525
Length 191527 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_4
Orthogroup size 23
N. genomes 7

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Genomic region

Domains

PF00577 Outer membrane usher protein
PF13953 PapC C-terminal domain
PF13954 PapC N-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3188 Cell motility (N)
Extracellular structures (W)		 NW Outer membrane usher protein FimD/PapC

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K12518 outer membrane usher protein PapC - -

Virulence factor Annotation(s)

VF gene ID Protein VF ID Category
VFG042623 MR/P fimbria usher protein MrpC VF1233 Adherence

Protein Sequence

MVIPLSTVSRRRLTVLISLILTGIPQAAYPDNQDVEFNTDILDVNDKQNIDLSDFSRAGYIMPGTYDFFIRVNNSELPDSYPVSYIVPPDDPKGSAACLSPELIAQAGLKPEWAERLRWWNNGKCLDTASLPGMSVSPKLADSELILTLPQAYLEYTAANWDPPSRWDEGISGVLFDYNVNAGINDPAHGKQTQQVTGNGTAGANLGVWRVRADWQANLRHTTGSGDRSEHNWTWSQTYLYRAIASLQAKLTMGETFSRSDIFDNFRYIGVNLATDDNMLPPNLRGYAPEVTGVAKTNAKITVSQQGRVIYETLVAPGPFRIQDINDAVSGKLDVRVEEQDGSVQSFQMDTASIPYLTRPGRVQYKLAAGQPSEIGRHGKGPVFGMGEFSWGISNGWSLYGGSLVAGDYNAVSLGVGRDLMAFGAISFDATQSFARLPQEDKQYRGGSYRLSYSKRFEELDSQVTFAGYRFSERDFMSMNQYLDRRYSDNRADNNKELYTIMFSKQFPDIGLSTYLNYSHQTYWNRPDNDNYNLSLAKYMDIGSYKNINISLSAYRNKYQDKNDDGVYLNISMPLGDRATVSYNSMLNRHGNSHNVSYYDRPDDNNSYRLGTGLSSNGKASVDGYYMHYADSALVTASAGHIDGEYTSASLSLQGGVTMTPQGGAFHRINMPGSARLLVDTGGVADVPVRSTGALSYTNRFGKAVLPDMNNYFRNSAAIDINKLPENAEARRSVQQLTLTEGAIGYRQFDVLSGQKAMAAIRLADGSEPPFGAVVTSADNRELGIVNDGGQVYLSGINSGDILTLRRGSEAACRMTVPELAPGHALYTLLLTCGAEPQSVPEKPQPVALPSSPPPADRPQQGKWLNITGRADPAPSTRNEMSDSL

Flanking regions ( +/- flanking 50bp)

CAGTGGGTTTCAAGCTGGAATATTATTAAACCGAGCTGACTGGATCCATTATGGTAATTCCGCTGAGTACCGTCTCCCGCCGGAGACTGACAGTGCTGATTTCATTAATTCTGACCGGTATCCCGCAGGCAGCTTATCCGGATAATCAGGATGTTGAATTTAATACTGATATTCTTGATGTAAATGACAAACAGAATATTGATCTGTCCGATTTTTCCCGTGCCGGTTATATCATGCCCGGCACCTACGACTTTTTTATCCGGGTAAATAACAGTGAGTTACCTGACAGTTATCCGGTCTCTTATATTGTGCCGCCGGATGATCCGAAAGGCAGTGCCGCCTGTTTATCCCCGGAGCTGATAGCGCAGGCCGGACTGAAACCGGAATGGGCAGAGCGCCTGCGCTGGTGGAATAACGGCAAATGTCTGGATACGGCGTCACTGCCGGGTATGTCGGTGTCACCGAAACTGGCGGACAGCGAGCTTATCCTGACACTGCCGCAGGCTTATCTGGAATACACCGCCGCTAACTGGGATCCGCCTTCCCGCTGGGATGAGGGAATTTCCGGCGTGCTGTTTGATTACAACGTGAATGCCGGTATTAATGACCCGGCACACGGCAAACAGACACAGCAGGTCACCGGGAACGGGACCGCCGGGGCAAACCTCGGGGTCTGGCGTGTCCGTGCCGACTGGCAGGCGAATCTCCGTCACACCACCGGTTCCGGGGATCGCTCCGAACATAACTGGACATGGAGTCAGACCTATCTCTACCGGGCGATTGCCTCATTACAGGCAAAACTGACGATGGGGGAAACCTTCTCGCGCTCGGATATTTTCGACAACTTCCGCTATATCGGGGTCAATCTGGCCACTGATGACAATATGCTGCCGCCGAATCTGCGCGGCTATGCACCGGAAGTGACCGGCGTGGCGAAAACCAATGCCAAAATTACCGTCAGCCAGCAGGGGCGGGTGATTTATGAAACTCTGGTCGCGCCGGGGCCGTTCCGTATTCAGGATATTAATGATGCGGTCAGCGGCAAACTGGATGTCCGGGTGGAGGAGCAGGATGGCTCTGTACAGTCATTTCAGATGGATACCGCCAGCATTCCTTACCTGACCCGTCCGGGCCGGGTGCAGTACAAACTCGCCGCCGGGCAGCCGTCCGAAATCGGCCGTCACGGGAAAGGCCCTGTCTTTGGTATGGGGGAATTCTCATGGGGGATCAGTAACGGCTGGTCATTATACGGCGGCTCCCTCGTTGCCGGGGACTATAACGCCGTTTCTCTTGGTGTTGGTCGTGATTTGATGGCCTTCGGGGCCATCTCTTTTGATGCCACCCAGTCTTTTGCCCGTCTGCCGCAGGAAGACAAACAGTATCGCGGCGGCTCATACCGTCTGAGTTACTCCAAACGGTTTGAGGAGCTGGACAGCCAGGTCACGTTCGCCGGATACCGTTTCTCCGAGCGCGACTTTATGAGCATGAATCAGTATCTGGATCGCCGCTACAGCGATAACCGCGCGGATAACAATAAAGAGCTGTACACCATCATGTTCAGCAAGCAGTTCCCGGATATCGGGCTGAGCACCTATCTGAACTACAGCCACCAGACTTACTGGAACCGGCCGGATAACGACAACTATAACCTGTCGCTGGCGAAGTATATGGATATCGGCAGTTATAAGAACATCAATATCAGCTTATCCGCTTACCGCAATAAATATCAGGATAAGAATGATGACGGGGTATATCTCAATATCAGCATGCCGCTGGGGGATCGCGCCACGGTCAGCTACAACAGCATGCTCAACCGTCATGGTAATTCTCATAACGTCAGTTATTACGACCGTCCGGATGATAACAACAGTTACCGCCTCGGTACTGGTCTGAGCAGCAACGGCAAAGCCTCCGTTGACGGCTATTACATGCACTATGCTGACAGCGCGCTGGTCACCGCCAGTGCCGGACATATTGACGGGGAATATACCTCCGCATCGCTCTCGCTTCAGGGCGGGGTGACAATGACACCGCAGGGCGGGGCATTCCACCGCATCAATATGCCGGGCAGCGCCCGTCTGCTGGTGGATACCGGCGGTGTGGCGGATGTGCCGGTCAGAAGTACCGGGGCACTCAGCTATACCAACCGCTTCGGGAAAGCCGTTCTGCCGGATATGAATAATTACTTCCGCAACAGTGCCGCCATCGATATCAACAAACTGCCGGAAAATGCGGAAGCACGTCGTTCTGTTCAGCAACTGACGCTGACAGAAGGCGCCATCGGCTACCGTCAGTTTGATGTGCTGTCAGGACAAAAAGCCATGGCCGCTATCCGTCTGGCAGATGGCAGCGAGCCGCCGTTCGGCGCGGTGGTGACTTCGGCGGATAACCGCGAACTGGGGATCGTCAATGACGGCGGGCAGGTGTATCTCAGTGGCATTAACAGCGGGGATATTCTGACGCTGCGGCGCGGCAGTGAGGCTGCGTGCCGGATGACGGTGCCGGAGCTTGCGCCGGGACACGCGCTGTACACCCTGTTGCTGACCTGCGGCGCAGAGCCGCAATCCGTTCCGGAAAAACCGCAGCCGGTTGCGCTGCCGTCTTCCCCGCCGCCGGCTGACCGCCCGCAGCAGGGGAAATGGCTGAATATCACAGGCCGGGCAGACCCGGCACCTTCCACACGTAACGAAATGAGTGATTCATTATGATGTCAGTTAAACAAACCCGTCTCTCTGTTCTGGCCGTTGCCGCTGTATTG