Homologs in group_4

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22 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_08985 FBDBKF_08985 100.0 Morganella morganii S1 - Outer membrane usher protein
FBDBKF_09035 FBDBKF_09035 52.9 Morganella morganii S1 fimD Outer membrane usher protein FimD/PapC
FBDBKF_18155 FBDBKF_18155 43.9 Morganella morganii S1 fimD Outer membrane usher protein FimD/PapC
EHELCC_10375 EHELCC_10375 52.9 Morganella morganii S2 fimD Outer membrane usher protein FimD/PapC
EHELCC_16855 EHELCC_16855 43.9 Morganella morganii S2 fimD Outer membrane usher protein FimD/PapC
NLDBIP_10720 NLDBIP_10720 52.9 Morganella morganii S4 fimD Outer membrane usher protein FimD/PapC
NLDBIP_10770 NLDBIP_10770 100.0 Morganella morganii S4 - Outer membrane usher protein
NLDBIP_17595 NLDBIP_17595 43.9 Morganella morganii S4 fimD Outer membrane usher protein FimD/PapC
LHKJJB_10585 LHKJJB_10585 100.0 Morganella morganii S3 - Outer membrane usher protein
LHKJJB_10635 LHKJJB_10635 52.9 Morganella morganii S3 fimD Outer membrane usher protein FimD/PapC
LHKJJB_17515 LHKJJB_17515 43.9 Morganella morganii S3 fimD Outer membrane usher protein FimD/PapC
HKOGLL_13645 HKOGLL_13645 100.0 Morganella morganii S5 - Outer membrane usher protein
HKOGLL_13695 HKOGLL_13695 52.9 Morganella morganii S5 fimD Outer membrane usher protein FimD/PapC
HKOGLL_17330 HKOGLL_17330 43.9 Morganella morganii S5 fimD Outer membrane usher protein FimD/PapC
F4V73_RS10360 F4V73_RS10360 43.2 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS10935 F4V73_RS10935 51.8 Morganella psychrotolerans - outer membrane usher protein
F4V73_RS10980 F4V73_RS10980 86.6 Morganella psychrotolerans - outer membrane usher protein
PMI_RS01235 PMI_RS01235 47.4 Proteus mirabilis HI4320 - outer membrane usher protein
PMI_RS01285 PMI_RS01285 50.4 Proteus mirabilis HI4320 mrpC MR/P fimbria usher protein MrpC
PMI_RS01440 PMI_RS01440 41.1 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS09270 PMI_RS09270 41.4 Proteus mirabilis HI4320 - fimbria/pilus outer membrane usher protein
PMI_RS10945 PMI_RS10945 45.8 Proteus mirabilis HI4320 - PapC/FimD family outer membrane usher protein

Distribution of the homologs in the orthogroup group_4

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_4

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P77196 0.0 841 48 7 846 5 yfcU Putative outer membrane usher protein YfcU Escherichia coli (strain K12)
P07110 0.0 748 47 12 830 1 papC Outer membrane usher protein PapC Escherichia coli
P53514 0.0 671 41 11 812 3 pmfC Outer membrane usher protein PmfC Proteus mirabilis (strain HI4320)
P76655 1.62e-175 531 37 13 807 5 yqiG Putative outer membrane usher protein YqiG Escherichia coli (strain K12)
P75750 6.13e-175 529 38 12 819 3 ybgQ Uncharacterized outer membrane usher protein YbgQ Escherichia coli (strain K12)
P30130 1.9e-97 327 30 20 822 1 fimD Outer membrane usher protein FimD Escherichia coli (strain K12)
P46009 1.6e-95 322 29 26 878 3 focD Outer membrane usher protein FocD Escherichia coli
Q8XDD1 5.36e-87 299 28 25 858 2 elfC Probable outer membrane usher protein ElfC Escherichia coli O157:H7
P75857 3.61e-85 294 28 24 853 2 elfC Probable outer membrane usher protein ElfC Escherichia coli (strain K12)
P43662 7.65e-82 284 28 21 812 3 lpfC Outer membrane usher protein LpfC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P37924 9.54e-82 285 28 21 878 3 fimD Outer membrane usher protein FimD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P77468 4.35e-81 283 28 20 819 2 sfmD Outer membrane usher protein SfmD Escherichia coli (strain K12)
P33129 1.11e-78 276 29 28 845 1 htrE Outer membrane usher protein HtrE Escherichia coli (strain K12)
P42915 2.98e-78 274 29 20 787 2 yraJ Outer membrane usher protein YraJ Escherichia coli (strain K12)
P53517 5.73e-73 260 28 25 861 3 afaC Outer membrane usher protein AfaC Escherichia coli
P33408 1.19e-68 247 26 21 800 3 myfC Outer membrane usher protein MyfC Yersinia enterocolitica
P33397 2.34e-68 246 27 29 851 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P45997 4.02e-68 246 28 30 851 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P45998 3.95e-65 237 27 25 812 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P33388 5.51e-65 236 26 25 790 3 sefC Outer membrane usher protein SefC Salmonella enteritidis
Q56983 7.47e-64 234 27 28 853 3 psaC Outer membrane usher protein PsaC Yersinia pseudotuberculosis serotype I (strain IP32953)
P31527 7.47e-64 234 27 28 853 3 psaC Outer membrane usher protein PsaC Yersinia pestis
P33341 5.34e-62 228 26 24 798 2 yehB Outer membrane usher protein YehB Escherichia coli (strain K12)
P26949 2.1e-58 218 25 21 819 1 caf1A F1 capsule-anchoring protein Yersinia pestis
P46000 4.61e-58 217 27 25 833 3 fasD Outer membrane usher protein FasD Escherichia coli
P15484 8.4e-54 205 26 25 738 3 None Outer membrane usher protein CS3-2 Escherichia coli
P46005 7.14e-53 202 25 25 856 3 aggC Outer membrane usher protein AggC Escherichia coli
P21647 7.93e-51 196 26 31 839 3 mrkC Outer membrane usher protein MrkC Klebsiella pneumoniae
P53512 1.25e-48 189 24 28 793 3 cssD Outer membrane usher protein CssD Escherichia coli
P53513 3.36e-48 187 23 28 793 3 cssD Outer membrane usher protein CssD Escherichia coli
P37868 4.47e-48 187 26 32 826 3 pefC Outer membrane usher protein PefC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P33410 5.73e-48 187 26 27 807 3 fimC Outer membrane usher protein FimC Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
P12050 6.12e-38 155 25 29 766 3 fanD Outer membrane usher protein FanD Escherichia coli
Q8X5K7 8.44e-37 145 32 10 340 2 lpfC Probable outer membrane usher protein LpfC Escherichia coli O157:H7
P06970 4.01e-34 144 24 27 831 3 faeD Outer membrane usher protein FaeD Escherichia coli
Q8X5K8 6.95e-34 140 27 15 479 2 lpfC' Probable outer membrane usher protein LpfC' Escherichia coli O157:H7
P45420 2.71e-30 132 23 33 796 3 yhcD Uncharacterized outer membrane usher protein YhcD Escherichia coli (strain K12)
Q7DBJ9 7.25e-16 84 26 12 356 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli O157:H7
P76137 1.36e-15 83 26 13 364 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Morganella morganii S2
Locus tag EHELCC_10425
Feature type CDS
Gene -
Product Outer membrane usher protein
Location 131343 - 133958 (strand: 1)
Length 2616 (nucleotides) / 871 (amino acids)

Contig

Accession ZDB_219
Length 213167 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_4
Orthogroup size 23
N. genomes 7

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Genomic region

Domains

PF00577 Outer membrane usher protein
PF13953 PapC C-terminal domain
PF13954 PapC N-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3188 Cell motility (N)
Extracellular structures (W)		 NW Outer membrane usher protein FimD/PapC

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K12518 outer membrane usher protein PapC - -

Protein Sequence

MNANVFAPGCGVSRPAVRLKPLTFLILLSLFSAAVQAEDITEFNTEVLDLNERGDIDLSQFSQAGYVMPGTYSLALKINNSMLAERQIRFLAPDNDPQGSMACITPDMSEELGLTSSAKGDLTWWHNGECADPASLPGMTLRADFAAGALRVSLPQAYLEYTADNWDPPSRWDEGIAGFILDYNLNTQLTKQREAGHSDRQDISGNGTTGLNAGAWRLRADWQGRYSRTNHESDQRWDWNRFYAYRAIAPLRAKLTLGENYLTSGMFDSFRYTGVALDTDDMMLPPNLRGYAPEVSGVAKTNARVTVKQQGRVIYETTVAAGPFQIRDLSNALSGKLDVEVAEQDGSVQTFQVDAASVPYLTRPGLVRYKVALGKPSEYDHRVKGPEFISSEFSWGISNGWSVYGGGLFAGKYNAVSAGIGRDLLMLGALSADITQSRASLPDGETKKGGSYRLSYSKRFDATNSQVTFAGYRFSERDFMTMSQYLNARYHNSAVTGNGKEMYTMTFSQSLSSLNTNVYLNFNHQTYWDRPASDNWNVSTSHYFDIGQVKNISLNLSAYRNRHENGRDDGMYVGLSVPWGESGSFGYSGQFSKGQNSHSADYSDRINERTNYRLSTGVTGDHRVTGNGYMNYRGDKAEVTATAGFSGERYSAAGLSVRGGFTATAEGAALHRSGVMGGTRMLVDTGGVADVPVRGGGAETTTNYFGKAVVSDVSNYYRSSVNVDLNRLGENAEATRSVVQGTLTEGAIGYRRFGIVSGQKAMAVLSLADGDVPPFGAVVQNHDHIQTGMVSEDGMVWLSGINPEETMQVSWGGDVQCEIRFPATIPDGNLLLPCVSASNPVPEKSEKSVKTEKISRWLTDADAENTRESKQ

Flanking regions ( +/- flanking 50bp)

AAAACAGGGGCATACCGGTCGACTGTTAACTTCAACCTGGATTATTTGTGATGAATGCCAATGTATTTGCGCCGGGCTGCGGAGTATCACGTCCGGCGGTGCGGTTAAAACCGCTGACATTTCTGATCCTGCTCTCTCTGTTTTCTGCGGCGGTACAGGCAGAGGACATTACAGAATTCAATACCGAGGTATTGGATCTGAATGAGCGCGGAGATATCGATTTATCACAGTTCTCTCAGGCGGGTTATGTGATGCCGGGAACCTATTCCCTGGCACTTAAGATCAATAACAGCATGCTGGCAGAGCGGCAAATCCGTTTTCTGGCCCCGGATAATGACCCGCAGGGCAGCATGGCCTGTATTACGCCTGATATGAGCGAAGAGCTGGGACTGACCTCATCTGCAAAAGGGGATTTGACCTGGTGGCATAACGGAGAGTGCGCGGATCCGGCATCACTGCCGGGGATGACTCTGCGGGCGGATTTTGCTGCCGGGGCACTGCGTGTCAGTCTGCCGCAGGCCTATCTGGAATATACCGCAGATAACTGGGATCCGCCGTCACGCTGGGATGAGGGAATTGCCGGTTTTATCCTTGATTACAACCTCAATACACAACTGACAAAACAGCGCGAGGCCGGACACAGTGACCGGCAGGACATCAGCGGTAACGGCACCACCGGGCTGAATGCCGGTGCCTGGCGTCTGCGTGCGGACTGGCAGGGGCGCTATTCGCGTACTAATCATGAATCGGATCAACGCTGGGACTGGAACCGGTTTTACGCTTACCGCGCGATTGCACCGCTGCGGGCAAAATTAACACTGGGGGAAAATTATCTCACCTCCGGCATGTTTGACAGCTTTCGCTATACCGGTGTGGCACTGGATACGGATGACATGATGCTGCCGCCGAATCTGCGCGGCTATGCCCCGGAAGTCTCCGGAGTGGCGAAAACCAACGCCAGGGTCACCGTGAAACAGCAGGGACGGGTGATTTATGAAACCACGGTTGCCGCCGGACCGTTTCAGATCCGGGATTTAAGCAATGCGCTGTCCGGCAAACTGGATGTGGAAGTGGCGGAGCAGGATGGTTCAGTACAGACCTTTCAGGTGGATGCGGCGAGTGTACCGTATCTGACCCGTCCGGGACTGGTGCGTTACAAAGTGGCGCTCGGTAAACCCTCGGAATATGACCACCGTGTCAAAGGACCGGAGTTTATCAGCAGTGAGTTTTCATGGGGTATCAGTAACGGCTGGTCTGTTTACGGCGGCGGGTTATTTGCCGGTAAATATAATGCTGTCTCGGCGGGTATCGGCCGTGACCTGCTGATGCTGGGGGCATTATCCGCCGATATCACCCAATCCCGCGCGTCACTGCCGGACGGTGAAACCAAAAAAGGCGGCTCTTACCGGCTGAGTTATTCCAAACGGTTCGATGCCACCAACAGCCAGGTCACCTTTGCCGGATACCGGTTTTCAGAGCGGGATTTTATGACCATGTCGCAATATCTGAATGCCCGTTATCACAATTCAGCGGTAACGGGTAACGGCAAAGAGATGTACACCATGACATTCAGTCAATCGCTCAGTTCGCTGAATACCAATGTGTACCTGAATTTTAACCACCAGACCTACTGGGATCGCCCGGCAAGTGATAACTGGAATGTTTCCACCTCTCATTATTTTGATATCGGGCAGGTGAAAAATATCAGTCTGAATTTATCGGCTTACCGCAACCGCCATGAAAACGGACGCGATGACGGGATGTATGTCGGGCTGTCTGTGCCGTGGGGGGAGAGTGGTAGTTTTGGTTACAGCGGACAATTCAGTAAAGGGCAGAACAGTCACTCGGCGGATTATAGTGACCGGATTAATGAGCGGACAAATTACCGTCTCAGCACAGGAGTGACCGGCGATCACCGGGTCACCGGTAACGGTTATATGAATTATCGCGGCGATAAAGCGGAAGTAACCGCAACTGCCGGATTTTCCGGTGAACGCTACAGTGCGGCCGGGCTGTCTGTACGCGGCGGGTTTACCGCCACCGCCGAAGGGGCGGCACTGCACCGCAGTGGTGTGATGGGCGGAACACGGATGCTGGTGGATACCGGCGGAGTAGCTGATGTTCCTGTCCGGGGCGGAGGCGCTGAAACCACAACCAACTATTTCGGTAAAGCGGTGGTCAGTGATGTCAGTAACTATTACCGCAGCAGTGTCAATGTGGATCTGAACCGGCTGGGGGAAAACGCCGAAGCCACCCGTTCCGTGGTGCAGGGCACGCTGACCGAGGGGGCAATTGGATACCGCCGCTTCGGTATTGTCTCAGGACAGAAAGCGATGGCGGTACTCAGCCTGGCTGACGGAGATGTTCCGCCGTTCGGGGCTGTGGTTCAGAACCACGATCATATACAGACCGGGATGGTCAGTGAAGATGGCATGGTCTGGCTCTCCGGTATCAATCCGGAAGAGACAATGCAGGTGTCATGGGGCGGGGATGTTCAGTGTGAAATCCGTTTCCCGGCGACGATCCCGGACGGAAATCTGCTGTTGCCGTGTGTCTCTGCGTCGAATCCGGTACCTGAAAAGTCAGAAAAATCAGTAAAAACAGAAAAAATATCCCGTTGGCTGACAGATGCTGACGCGGAAAACACCAGAGAGAGTAAGCAATGAAGAATCAATACAACCGTTTTACTTCACGAAGCCTTCCGGTACTGATACTG