PF19300


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF19300, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 28 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF19300
Description Binding-prot-dependent transport system membrane comp, N-term

Occurence in the database

PF19300 is associated with 28 different proteins (see tab "Protein list" and "Profile")
The 28 proteins are classified into 5 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_962 FBDBKF_05290 62660 63580 -1 oppB oligopeptide ABC transporter permease OppB Morganella morganii S1
1 group_964 FBDBKF_05310 69450 70496 1 dppB ABC-type dipeptide/oligopeptide/nickel transport system, permease component Morganella morganii S1
2 group_2789 FBDBKF_08935 4152 5096 -1 nikB nickel ABC transporter permease subunit NikB Morganella morganii S1
3 group_344 FBDBKF_11985 45368 46387 -1 dppB dipeptide ABC transporter permease DppB Morganella morganii S1
4 group_2789 EHELCC_10475 141008 141952 1 nikB nickel ABC transporter permease subunit NikB Morganella morganii S2
5 group_964 EHELCC_12280 110998 112044 -1 dppB ABC-type dipeptide/oligopeptide/nickel transport system, permease component Morganella morganii S2
6 group_962 EHELCC_12300 117914 118834 1 oppB oligopeptide ABC transporter permease OppB Morganella morganii S2
7 group_344 EHELCC_14320 88318 89337 1 dppB dipeptide ABC transporter permease DppB Morganella morganii S2
8 group_2789 NLDBIP_10820 119279 120223 1 nikB nickel ABC transporter permease subunit NikB Morganella morganii S4
9 group_964 NLDBIP_12620 110953 111999 -1 dppB ABC-type dipeptide/oligopeptide/nickel transport system, permease component Morganella morganii S4
10 group_962 NLDBIP_12640 117869 118789 1 oppB oligopeptide ABC transporter permease OppB Morganella morganii S4
11 group_344 NLDBIP_15415 92255 93274 1 dppB dipeptide ABC transporter permease DppB Morganella morganii S4
12 group_2789 LHKJJB_10535 71305 72249 -1 nikB nickel ABC transporter permease subunit NikB Morganella morganii S3
13 group_964 LHKJJB_12480 110998 112044 -1 dppB ABC-type dipeptide/oligopeptide/nickel transport system, permease component Morganella morganii S3
14 group_962 LHKJJB_12500 117914 118834 1 oppB oligopeptide ABC transporter permease OppB Morganella morganii S3
15 group_344 LHKJJB_15195 45368 46387 -1 dppB dipeptide ABC transporter permease DppB Morganella morganii S3
16 group_964 HKOGLL_11095 110998 112044 -1 dppB ABC-type dipeptide/oligopeptide/nickel transport system, permease component Morganella morganii S5
17 group_962 HKOGLL_11115 117914 118834 1 oppB oligopeptide ABC transporter permease OppB Morganella morganii S5
18 group_2789 HKOGLL_13595 4606 5550 -1 nikB nickel ABC transporter permease subunit NikB Morganella morganii S5
19 group_344 HKOGLL_14315 32031 33050 -1 dppB dipeptide ABC transporter permease DppB Morganella morganii S5
20 group_962 F4V73_RS05745 1219344 1220264 -1 oppB oligopeptide ABC transporter permease OppB Morganella psychrotolerans
21 group_964 F4V73_RS05765 1226253 1227299 1 ABC transporter permease Morganella psychrotolerans
22 group_344 F4V73_RS14670 169993 171012 1 dppB dipeptide ABC transporter permease DppB Morganella psychrotolerans
23 group_962 PMI_RS07135 1557637 1558557 -1 oppB oligopeptide ABC transporter permease OppB Proteus mirabilis HI4320
24 group_964 PMI_RS07170 1569089 1570129 1 ABC transporter permease Proteus mirabilis HI4320
25 group_1165 PMI_RS12435 2757190 2758173 -1 ABC transporter permease Proteus mirabilis HI4320
26 group_344 PMI_RS14060 3121335 3122354 -1 dppB dipeptide ABC transporter permease DppB Proteus mirabilis HI4320
27 group_2789 PMI_RS14565 3228962 3229888 -1 ABC transporter permease subunit Proteus mirabilis HI4320