PF19300
Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF19300, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains
within the database. 28 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.
Description
External link |
PF19300 |
Description |
Binding-prot-dependent transport system membrane comp, N-term |
Occurence in the database
PF19300 is associated with 28 different proteins (see tab "Protein list" and "Profile") |
The 28 proteins are classified into 5 different orthogroup(s)
|
# |
Orthogroup |
Locus |
Start |
Stop |
S. |
Gene |
Product |
Organism |
0 |
group_962 |
FBDBKF_05290 |
62660 |
63580 |
-1 |
oppB |
oligopeptide ABC transporter permease OppB |
Morganella morganii S1 |
1 |
group_964 |
FBDBKF_05310 |
69450 |
70496 |
1 |
dppB |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component |
Morganella morganii S1 |
2 |
group_2789 |
FBDBKF_08935 |
4152 |
5096 |
-1 |
nikB |
nickel ABC transporter permease subunit NikB |
Morganella morganii S1 |
3 |
group_344 |
FBDBKF_11985 |
45368 |
46387 |
-1 |
dppB |
dipeptide ABC transporter permease DppB |
Morganella morganii S1 |
4 |
group_2789 |
EHELCC_10475 |
141008 |
141952 |
1 |
nikB |
nickel ABC transporter permease subunit NikB |
Morganella morganii S2 |
5 |
group_964 |
EHELCC_12280 |
110998 |
112044 |
-1 |
dppB |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component |
Morganella morganii S2 |
6 |
group_962 |
EHELCC_12300 |
117914 |
118834 |
1 |
oppB |
oligopeptide ABC transporter permease OppB |
Morganella morganii S2 |
7 |
group_344 |
EHELCC_14320 |
88318 |
89337 |
1 |
dppB |
dipeptide ABC transporter permease DppB |
Morganella morganii S2 |
8 |
group_2789 |
NLDBIP_10820 |
119279 |
120223 |
1 |
nikB |
nickel ABC transporter permease subunit NikB |
Morganella morganii S4 |
9 |
group_964 |
NLDBIP_12620 |
110953 |
111999 |
-1 |
dppB |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component |
Morganella morganii S4 |
10 |
group_962 |
NLDBIP_12640 |
117869 |
118789 |
1 |
oppB |
oligopeptide ABC transporter permease OppB |
Morganella morganii S4 |
11 |
group_344 |
NLDBIP_15415 |
92255 |
93274 |
1 |
dppB |
dipeptide ABC transporter permease DppB |
Morganella morganii S4 |
12 |
group_2789 |
LHKJJB_10535 |
71305 |
72249 |
-1 |
nikB |
nickel ABC transporter permease subunit NikB |
Morganella morganii S3 |
13 |
group_964 |
LHKJJB_12480 |
110998 |
112044 |
-1 |
dppB |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component |
Morganella morganii S3 |
14 |
group_962 |
LHKJJB_12500 |
117914 |
118834 |
1 |
oppB |
oligopeptide ABC transporter permease OppB |
Morganella morganii S3 |
15 |
group_344 |
LHKJJB_15195 |
45368 |
46387 |
-1 |
dppB |
dipeptide ABC transporter permease DppB |
Morganella morganii S3 |
16 |
group_964 |
HKOGLL_11095 |
110998 |
112044 |
-1 |
dppB |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component |
Morganella morganii S5 |
17 |
group_962 |
HKOGLL_11115 |
117914 |
118834 |
1 |
oppB |
oligopeptide ABC transporter permease OppB |
Morganella morganii S5 |
18 |
group_2789 |
HKOGLL_13595 |
4606 |
5550 |
-1 |
nikB |
nickel ABC transporter permease subunit NikB |
Morganella morganii S5 |
19 |
group_344 |
HKOGLL_14315 |
32031 |
33050 |
-1 |
dppB |
dipeptide ABC transporter permease DppB |
Morganella morganii S5 |
20 |
group_962 |
F4V73_RS05745 |
1219344 |
1220264 |
-1 |
oppB |
oligopeptide ABC transporter permease OppB |
Morganella psychrotolerans |
21 |
group_964 |
F4V73_RS05765 |
1226253 |
1227299 |
1 |
|
ABC transporter permease |
Morganella psychrotolerans |
22 |
group_344 |
F4V73_RS14670 |
169993 |
171012 |
1 |
dppB |
dipeptide ABC transporter permease DppB |
Morganella psychrotolerans |
23 |
group_962 |
PMI_RS07135 |
1557637 |
1558557 |
-1 |
oppB |
oligopeptide ABC transporter permease OppB |
Proteus mirabilis HI4320 |
24 |
group_964 |
PMI_RS07170 |
1569089 |
1570129 |
1 |
|
ABC transporter permease |
Proteus mirabilis HI4320 |
25 |
group_1165 |
PMI_RS12435 |
2757190 |
2758173 |
-1 |
|
ABC transporter permease |
Proteus mirabilis HI4320 |
26 |
group_344 |
PMI_RS14060 |
3121335 |
3122354 |
-1 |
dppB |
dipeptide ABC transporter permease DppB |
Proteus mirabilis HI4320 |
27 |
group_2789 |
PMI_RS14565 |
3228962 |
3229888 |
-1 |
|
ABC transporter permease subunit |
Proteus mirabilis HI4320 |