Orthogroup:group_1225



Homologs in group_1225

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_07140 FBDBKF_07140 Morganella morganii S1 ycaO 30S ribosomal protein S12 methylthiotransferase accessory factor YcaO
EHELCC_03830 EHELCC_03830 Morganella morganii S2 ycaO 30S ribosomal protein S12 methylthiotransferase accessory factor YcaO
NLDBIP_03830 NLDBIP_03830 Morganella morganii S4 ycaO 30S ribosomal protein S12 methylthiotransferase accessory factor YcaO
LHKJJB_09660 LHKJJB_09660 Morganella morganii S3 ycaO 30S ribosomal protein S12 methylthiotransferase accessory factor YcaO
HKOGLL_09315 HKOGLL_09315 Morganella morganii S5 ycaO 30S ribosomal protein S12 methylthiotransferase accessory factor YcaO
F4V73_RS01325 F4V73_RS01325 Morganella psychrotolerans ycaO 30S ribosomal protein S12 methylthiotransferase accessory factor YcaO
PMI_RS03480 PMI_RS03480 Proteus mirabilis HI4320 - 30S ribosomal protein S12 methylthiotransferase accessory protein YcaO

Distribution of group_1225 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1225 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1225

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1225.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 ycaO 6
2 - 1

Product

# Product Occurence
1 30S ribosomal protein S12 methylthiotransferase accessory factor YcaO 6
2 30S ribosomal protein S12 methylthiotransferase accessory protein YcaO 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1944 7 J Translation, ribosomal structure and biogenesis (J) Ribosomal protein S12 methylthiotransferase accessory factor YcaO

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K09136 7 ribosomal protein S12 methylthiotransferase accessory factor - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF02624 7 YcaO cyclodehydratase, ATP-ad Mg2+-binding
PF18381 7 YcaO cyclodehydratase C-terminal domain

Annotations of the 2 SwissProt hits

Annotation Number of occurrences
Ribosomal protein S12 methylthiotransferase accessory factor YcaO 1
Uncharacterized protein HI_1265 1

Protein length

Min length 585
Max length 604
Mean length (sd) 600.0 (7.4)
Median length 604.0

Protein length distribution