Homologs in group_964

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_05310 FBDBKF_05310 91.1 Morganella morganii S1 dppB ABC-type dipeptide/oligopeptide/nickel transport system, permease component
EHELCC_12280 EHELCC_12280 91.1 Morganella morganii S2 dppB ABC-type dipeptide/oligopeptide/nickel transport system, permease component
NLDBIP_12620 NLDBIP_12620 91.1 Morganella morganii S4 dppB ABC-type dipeptide/oligopeptide/nickel transport system, permease component
LHKJJB_12480 LHKJJB_12480 91.1 Morganella morganii S3 dppB ABC-type dipeptide/oligopeptide/nickel transport system, permease component
HKOGLL_11095 HKOGLL_11095 91.1 Morganella morganii S5 dppB ABC-type dipeptide/oligopeptide/nickel transport system, permease component
PMI_RS07170 PMI_RS07170 70.5 Proteus mirabilis HI4320 - ABC transporter permease

Distribution of the homologs in the orthogroup group_964

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_964

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
A0A0H2ZGW7 1.69e-73 234 41 2 320 1 dppB Di/tripeptide transport system permease protein DppB Pseudomonas aeruginosa (strain UCBPP-PA14)
P0AEF8 1.22e-69 224 38 2 321 1 dppB Dipeptide transport system permease protein DppB Escherichia coli (strain K12)
P0AEF9 1.22e-69 224 38 2 321 3 dppB Dipeptide transport system permease protein DppB Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AEG0 1.22e-69 224 38 2 321 3 dppB Dipeptide transport system permease protein DppB Escherichia coli O157:H7
P45096 8.03e-69 221 38 4 335 3 dppB Dipeptide transport system permease protein DppB Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P77308 3.05e-67 218 40 1 327 1 ddpB Probable D,D-dipeptide transport system permease protein DdpB Escherichia coli (strain K12)
Q8FUX0 1.74e-57 192 37 3 313 3 BRA1092 Putative peptide transport system permease protein BRA1092/BS1330_II1084 Brucella suis biovar 1 (strain 1330)
Q2YJK1 4.37e-57 191 37 3 313 3 BAB2_1050 Putative peptide transport system permease protein BAB2_1050 Brucella abortus (strain 2308)
Q8VQK4 4.37e-57 191 37 3 313 3 BruAb2_1031 Putative peptide transport system permease protein BruAb2_1031 Brucella abortus biovar 1 (strain 9-941)
Q8YDG7 4.54e-57 191 37 3 313 3 BMEII0209 Putative peptide transport system permease protein BMEII0209 Brucella melitensis biotype 1 (strain ATCC 23456 / CCUG 17765 / NCTC 10094 / 16M)
P94311 1.68e-56 189 34 1 319 3 dppB Dipeptide transport system permease protein DppB Alkalihalophilus pseudofirmus (strain ATCC BAA-2126 / JCM 17055 / OF4)
P0AGH3 6.3e-46 162 35 4 271 1 sapB Putrescine export system permease protein SapB Escherichia coli (strain K12)
P0AGH4 6.3e-46 162 35 4 271 3 sapB Peptide transport system permease protein SapB Escherichia coli O157:H7
P42062 2.18e-45 160 29 5 335 3 appB Oligopeptide transport system permease protein AppB Bacillus subtilis (strain 168)
P33591 2.25e-44 157 32 1 288 1 nikB Nickel transport system permease protein NikB Escherichia coli (strain K12)
Q53191 4.51e-42 151 31 6 334 3 NGR_a01430 Probable peptide ABC transporter permease protein y4tP Sinorhizobium fredii (strain NBRC 101917 / NGR234)
P0A2J3 9.79e-41 148 35 4 271 2 sapB Peptide transport system permease protein SapB Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A2J4 9.79e-41 148 35 4 271 3 sapB Peptide transport system permease protein SapB Salmonella typhi
Q8FJK9 5.34e-39 143 27 2 333 3 gsiC Glutathione transport system permease protein GsiC Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q8X6V7 1.04e-38 142 27 2 333 3 gsiC Glutathione transport system permease protein GsiC Escherichia coli O157:H7
Q32IB7 1.43e-38 142 27 2 333 3 gsiC Glutathione transport system permease protein GsiC Shigella dysenteriae serotype 1 (strain Sd197)
Q1RE94 1.43e-38 142 27 2 333 3 gsiC Glutathione transport system permease protein GsiC Escherichia coli (strain UTI89 / UPEC)
P75798 1.43e-38 142 27 2 333 1 gsiC Glutathione transport system permease protein GsiC Escherichia coli (strain K12)
Q0TJL7 1.43e-38 142 27 2 333 3 gsiC Glutathione transport system permease protein GsiC Escherichia coli O6:K15:H31 (strain 536 / UPEC)
A1A970 1.43e-38 142 27 2 333 3 gsiC Glutathione transport system permease protein GsiC Escherichia coli O1:K1 / APEC
Q0T6D1 4.55e-38 140 27 2 333 3 gsiC Glutathione transport system permease protein GsiC Shigella flexneri serotype 5b (strain 8401)
Q3Z3V2 4.8e-38 140 27 2 333 3 gsiC Glutathione transport system permease protein GsiC Shigella sonnei (strain Ss046)
Q83S26 7.22e-38 140 27 2 333 3 gsiC Glutathione transport system permease protein GsiC Shigella flexneri
Q8FWN8 2.34e-37 139 30 3 323 3 BRA0408 Putative peptide permease protein BRA0408/BS1330_II0405 Brucella suis biovar 1 (strain 1330)
Q323W3 3.78e-37 138 27 2 333 3 gsiC Glutathione transport system permease protein GsiC Shigella boydii serotype 4 (strain Sb227)
Q8Z862 4.29e-37 138 27 2 333 3 gsiC Glutathione transport system permease protein GsiC Salmonella typhi
Q57RB0 4.29e-37 138 27 2 333 3 gsiC Glutathione transport system permease protein GsiC Salmonella choleraesuis (strain SC-B67)
Q8ZQM2 7.63e-37 137 27 2 333 3 gsiC Glutathione transport system permease protein GsiC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q8YBN9 1.86e-36 137 29 3 323 3 BMEII0860 Putative peptide permease protein BMEII0860 Brucella melitensis biotype 1 (strain ATCC 23456 / CCUG 17765 / NCTC 10094 / 16M)
A5VU90 1.86e-36 137 29 3 323 3 BOV_A0351 Putative peptide permease protein BOV_A0351 Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512)
Q6D3B1 6.72e-36 135 28 2 333 3 gsiC Glutathione transport system permease protein GsiC Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)
Q5PGP5 9.39e-36 135 27 2 333 3 gsiC Glutathione transport system permease protein GsiC Salmonella paratyphi A (strain ATCC 9150 / SARB42)
P45286 1.86e-35 134 30 5 278 3 sapB Peptide transport system permease protein SapB Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
A2RI75 5.23e-35 132 31 4 291 1 dppB Dipeptide transport system permease protein DppB Lactococcus lactis subsp. cremoris (strain MG1363)
P0A4N8 9.21e-31 122 25 2 333 3 oppB Oligopeptide transport system permease protein OppB Lactococcus lactis subsp. cremoris (strain SK11)
P0A4N7 9.21e-31 122 25 2 333 1 oppB Oligopeptide transport system permease protein OppB Lactococcus lactis subsp. lactis (strain IL1403)
P08005 1.8e-29 118 25 6 339 1 oppB Oligopeptide transport system permease protein OppB Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0AFH5 1.58e-27 112 24 6 339 3 oppB Oligopeptide transport system permease protein OppB Shigella flexneri
P0AFH2 1.58e-27 112 24 6 339 1 oppB Oligopeptide transport system permease protein OppB Escherichia coli (strain K12)
P0AFH3 1.58e-27 112 24 6 339 3 oppB Oligopeptide transport system permease protein OppB Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AFH4 1.58e-27 112 24 6 339 3 oppB Oligopeptide transport system permease protein OppB Escherichia coli O157:H7
P26903 3.31e-27 112 25 6 337 2 dppB Dipeptide transport system permease protein DppB Bacillus subtilis (strain 168)
P45054 1.86e-26 110 25 3 289 3 oppB Oligopeptide transport system permease protein OppB Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q7A5Q6 3.17e-26 109 25 3 314 3 nikB Nickel import system permease protein NikB Staphylococcus aureus (strain N315)
Q99UA0 3.17e-26 109 25 3 314 3 nikB Nickel import system permease protein NikB Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q5HG38 3.3e-26 109 25 3 314 3 nikB Nickel import system permease protein NikB Staphylococcus aureus (strain COL)
Q2FYQ5 3.3e-26 109 25 3 314 1 nikB Nickel import system permease protein NikB Staphylococcus aureus (strain NCTC 8325 / PS 47)
Q2FH55 3.3e-26 109 25 3 314 3 nikB Nickel import system permease protein NikB Staphylococcus aureus (strain USA300)
Q8NWT4 3.68e-26 109 25 3 314 3 nikB Nickel import system permease protein NikB Staphylococcus aureus (strain MW2)
Q6G9H8 3.68e-26 109 25 3 314 3 nikB Nickel import system permease protein NikB Staphylococcus aureus (strain MSSA476)
Q2YXY7 5.2e-26 109 25 3 314 3 nikB Nickel import system permease protein NikB Staphylococcus aureus (strain bovine RF122 / ET3-1)
Q6GH25 5.41e-26 109 24 3 336 3 nikB Nickel import system permease protein NikB Staphylococcus aureus (strain MRSA252)
A9CKL3 2.05e-22 100 25 4 293 3 yejB Peptidoglycan transport system permease protein YejB Agrobacterium fabrum (strain C58 / ATCC 33970)
P66967 2.34e-21 96 27 5 306 3 BQ2027_MB1314C Putative peptide transport permease protein Mb1314c Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
P9WFZ7 2.34e-21 96 27 5 306 1 Rv1283c Putative peptide transport permease protein Rv1283c Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WFZ6 2.34e-21 96 27 5 306 3 MT1320 Putative peptide transport permease protein MT1320 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P24138 5e-21 95 25 3 291 1 oppB Oligopeptide transport system permease protein OppB Bacillus subtilis (strain 168)
P0AFU0 5.18e-18 87 25 5 295 1 yejB Inner membrane ABC transporter permease protein YejB Escherichia coli (strain K12)
P0AFU1 5.18e-18 87 25 5 295 3 yejB Inner membrane ABC transporter permease protein YejB Escherichia coli O157:H7
Q2FVE8 5.65e-18 86 22 6 292 1 cntB Metal-staphylopine import system permease protein CntB Staphylococcus aureus (strain NCTC 8325 / PS 47)
A0A0H3K104 7e-18 86 22 6 292 1 cntB Metal-staphylopine import system permease protein CntB Staphylococcus aureus (strain Mu50 / ATCC 700699)
P75554 6.72e-17 84 23 4 298 3 oppB Oligopeptide transport system permease protein OppB Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1)
P47323 1.54e-15 80 25 6 286 3 oppB Oligopeptide transport system permease protein OppB Mycoplasma genitalium (strain ATCC 33530 / DSM 19775 / NCTC 10195 / G37)
P0A4M8 5.28e-11 67 28 0 132 3 amiC Oligopeptide transport system permease protein AmiC Streptococcus pneumoniae (strain ATCC BAA-255 / R6)
P0A4M7 5.28e-11 67 28 0 132 3 amiC Oligopeptide transport system permease protein AmiC Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
P0A4P0 6.75e-06 50 29 0 65 3 oppC Oligopeptide transport system permease protein OppC Lactococcus lactis subsp. cremoris (strain SK11)
P0A4N9 7.81e-06 50 29 0 65 1 oppC Oligopeptide transport system permease protein OppC Lactococcus lactis subsp. lactis (strain IL1403)
A0A0H2ZFV0 1.02e-05 50 37 3 87 1 dppC Di/tripeptide transport system permease protein DppC Pseudomonas aeruginosa (strain UCBPP-PA14)
P0AEG1 2.62e-05 48 37 0 61 1 dppC Dipeptide transport system permease protein DppC Escherichia coli (strain K12)
P0AEG2 2.62e-05 48 37 0 61 3 dppC Dipeptide transport system permease protein DppC Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AEG3 2.62e-05 48 37 0 61 3 dppC Dipeptide transport system permease protein DppC Escherichia coli O157:H7
P42063 5.61e-05 48 34 2 85 3 appC Oligopeptide transport system permease protein AppC Bacillus subtilis (strain 168)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS05765
Feature type CDS
Gene -
Product ABC transporter permease
Location 1226253 - 1227299 (strand: 1)
Length 1047 (nucleotides) / 348 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_964
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF00528 Binding-protein-dependent transport system inner membrane component
PF19300 Binding-prot-dependent transport system membrane comp, N-term

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0601 Amino acid transport and metabolism (E)
Inorganic ion transport and metabolism (P)		 EP ABC-type dipeptide/oligopeptide/nickel transport system, permease component

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K02033 peptide/nickel transport system permease protein Quorum sensing -

Protein Sequence

MSDSSPAAAVLRHVLRVTVQSIFTLSLTLLGLLIITFALSALSPVDRVLQIVGDHASHETYQQVKLELGLDQPVYIQFWHYLGRLLHGDLGIAASMGQPVLDGVLHTLPATIELATLALIAGSSLGILCGVLCARYAGSPLDFIIRTLTLLGNSVPVFWLGLLMLLLFYATLQWSPGPGRLDDIYQYTIEAKTGFVLIDTWLSGEPGAFTNAVAHLILPVSLLAYFCLAGITRLTRAACLSEMNKEYVTLARAKGNTDMQVLFCHVLPNIRGTLITVVALAYTGMLEGAVLTETVFSWPGIGRYLTAALFAGDTTAVMGGTLVIGICFIFINNVTDMIVRLTDPRVTL

Flanking regions ( +/- flanking 50bp)

CCGGGATCACCGGCGGGTTATTGTCTTTTGTTTTATTCAGGAATAGCTGTATGTCTGACTCTTCGCCTGCCGCCGCTGTGCTGCGCCATGTCCTGCGTGTCACTGTTCAGAGTATTTTTACGCTGTCACTGACACTGCTCGGGCTGCTGATCATCACCTTCGCGCTTTCTGCTCTGTCCCCGGTTGACCGGGTGCTGCAAATTGTCGGCGATCACGCCAGCCACGAAACCTATCAACAGGTAAAACTGGAACTGGGGCTGGATCAGCCCGTTTATATTCAGTTCTGGCATTATCTGGGCAGATTGCTGCATGGCGATCTCGGGATCGCCGCCTCTATGGGGCAACCCGTACTTGATGGCGTACTCCATACCCTGCCCGCCACGATTGAGCTGGCAACCCTTGCACTGATCGCGGGGTCATCGCTCGGCATTCTGTGTGGTGTGTTGTGCGCCCGCTATGCAGGTTCACCCCTTGATTTTATCATCCGTACCCTGACACTTCTCGGTAACTCTGTTCCTGTTTTCTGGCTGGGACTGCTGATGCTGCTGCTGTTTTATGCCACGCTGCAATGGAGTCCGGGACCCGGACGGCTGGATGATATCTATCAATATACAATTGAGGCAAAAACCGGGTTTGTATTGATTGATACCTGGCTTTCCGGTGAACCGGGAGCATTTACCAATGCGGTTGCACATCTGATTTTACCGGTGTCGCTGCTTGCCTATTTTTGTCTGGCGGGAATAACCCGGCTGACCCGCGCCGCGTGTCTGAGTGAAATGAACAAAGAGTATGTCACCCTGGCGCGTGCCAAAGGCAATACGGACATGCAGGTTCTGTTCTGCCATGTGTTGCCGAACATCCGTGGCACACTGATAACCGTGGTCGCGCTGGCGTACACCGGAATGCTGGAAGGTGCGGTACTGACCGAAACGGTTTTCTCCTGGCCCGGCATCGGACGCTATCTCACCGCCGCCCTGTTTGCCGGAGACACAACTGCCGTCATGGGCGGCACACTGGTTATCGGGATCTGCTTTATCTTTATCAATAATGTGACTGATATGATTGTGCGCTTAACTGACCCACGGGTGACATTATGAGATTACTGCCGAAAATCCGCCGGTCACCTTCCGCACTGACCGGCTCACTG