PF04542

Help to interpret the results

Three outputs have been generated:
General: this tab contains the description, occurence in the database and other information related to the selected Pfam domain PF04542
Protein list: lists the 42 occurences of the Pfam domain within the database. The table reports information on each occurence.
Profile: phylogenetic tree annotated with
- the presence of the Pfam domain of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domain has been clustered.
Orthogroups are shown in red if they are annotated with that particular Pfam domain in a given genome , in green otherwise, i.e. if there is a discrepency between orthogroup clustering and Pfam domain prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domain.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domain prediction.

Description

External link PF04542
Description Sigma-70 region 2

Occurence in the database

PF04542 is associated with 42 different proteins
The 42 proteins are classified into 6 different orthogroup(s)
Orthogroup Locus Start Stop S. Gene Product Organism
0 group_520 FBDBKF_00515 86305 87027 -1 fliA DNA-directed RNA polymerase specialized sigma subunit Morganella morganii S1
1 group_639 FBDBKF_01460 290673 291251 -1 rpoE RNA polymerase sigma factor RpoE Morganella morganii S1
2 group_833 FBDBKF_03515 107558 108412 -1 rpoH RNA polymerase sigma factor RpoH Morganella morganii S1
3 group_2317 FBDBKF_17530 40418 42268 1 rpoD RNA polymerase sigma factor RpoD Morganella morganii S1
4 group_2339 FBDBKF_17720 1188 1730 1 rpoE DNA-directed RNA polymerase specialized sigma subunit, sigma24 family Morganella morganii S1
5 group_2383 FBDBKF_18965 11096 12088 -1 rpoS RNA polymerase sigma factor RpoS Morganella morganii S1
6 group_639 EHELCC_00085 17617 18195 1 rpoE RNA polymerase sigma factor RpoE Morganella morganii S2
7 group_520 EHELCC_01030 221841 222563 1 fliA DNA-directed RNA polymerase specialized sigma subunit Morganella morganii S2
8 group_833 EHELCC_07020 138691 139545 1 rpoH RNA polymerase sigma factor RpoH Morganella morganii S2
9 group_2339 EHELCC_09745 180620 181162 1 rpoE DNA-directed RNA polymerase specialized sigma subunit, sigma24 family Morganella morganii S2
10 group_2317 EHELCC_17425 40418 42268 1 rpoD RNA polymerase sigma factor RpoD Morganella morganii S2
11 group_2383 EHELCC_18710 11096 12088 -1 rpoS RNA polymerase sigma factor RpoS Morganella morganii S2
12 group_520 NLDBIP_02430 457573 458295 -1 fliA DNA-directed RNA polymerase specialized sigma subunit Morganella morganii S4
13 group_639 NLDBIP_03375 661941 662519 -1 rpoE RNA polymerase sigma factor RpoE Morganella morganii S4
14 group_833 NLDBIP_07345 138564 139418 1 rpoH RNA polymerase sigma factor RpoH Morganella morganii S4
15 group_2339 NLDBIP_10125 180620 181162 1 rpoE DNA-directed RNA polymerase specialized sigma subunit, sigma24 family Morganella morganii S4
16 group_2317 NLDBIP_17770 528 2378 -1 rpoD RNA polymerase sigma factor RpoD Morganella morganii S4
17 group_2383 NLDBIP_18595 13425 14417 1 rpoS RNA polymerase sigma factor RpoS Morganella morganii S4
18 group_520 LHKJJB_03945 64814 65536 -1 fliA DNA-directed RNA polymerase specialized sigma subunit Morganella morganii S3
19 group_639 LHKJJB_04890 269182 269760 -1 rpoE RNA polymerase sigma factor RpoE Morganella morganii S3
20 group_833 LHKJJB_06880 102310 103164 1 rpoH RNA polymerase sigma factor RpoH Morganella morganii S3
21 group_2339 LHKJJB_07630 36076 36618 -1 rpoE DNA-directed RNA polymerase specialized sigma subunit, sigma24 family Morganella morganii S3
22 group_2317 LHKJJB_17690 526 2376 -1 rpoD RNA polymerase sigma factor RpoD Morganella morganii S3
23 group_2383 LHKJJB_18580 11096 12088 -1 rpoS RNA polymerase sigma factor RpoS Morganella morganii S3
24 group_639 HKOGLL_02155 17822 18400 1 rpoE RNA polymerase sigma factor RpoE Morganella morganii S5
25 group_520 HKOGLL_03100 222046 222768 1 fliA DNA-directed RNA polymerase specialized sigma subunit Morganella morganii S5
26 group_833 HKOGLL_04050 130223 131077 -1 rpoH RNA polymerase sigma factor RpoH Morganella morganii S5
27 group_2339 HKOGLL_07180 36076 36618 -1 rpoE DNA-directed RNA polymerase specialized sigma subunit, sigma24 family Morganella morganii S5
28 group_2317 HKOGLL_17700 526 2376 -1 rpoD RNA polymerase sigma factor RpoD Morganella morganii S5
29 group_2383 HKOGLL_18315 11096 12088 -1 rpoS RNA polymerase sigma factor RpoS Morganella morganii S5
30 group_639 F4V73_RS01945 425400 425975 1 rpoE RNA polymerase sigma factor RpoE Morganella psychrotolerans
31 group_520 F4V73_RS06525 1362145 1362867 -1 RNA polymerase sigma factor FliA Morganella psychrotolerans
32 group_833 F4V73_RS11385 419291 420145 1 rpoH RNA polymerase sigma factor RpoH Morganella psychrotolerans
33 group_2383 F4V73_RS13875 412519 413520 -1 rpoS RNA polymerase sigma factor RpoS Morganella psychrotolerans
34 group_2339 F4V73_RS15240 33662 34201 -1 RNA polymerase sigma factor Morganella psychrotolerans
35 group_2317 F4V73_RS16710 164268 166163 1 rpoD RNA polymerase sigma factor RpoD Morganella psychrotolerans
36 group_520 PMI_RS07905 1732441 1733163 -1 RNA polymerase sigma factor FliA Proteus mirabilis HI4320
37 group_639 PMI_RS09350 2040616 2041194 -1 rpoE RNA polymerase sigma factor RpoE Proteus mirabilis HI4320
38 group_2383 PMI_RS11015 2425405 2426394 -1 rpoS RNA polymerase sigma factor RpoS Proteus mirabilis HI4320
39 group_2317 PMI_RS11730 2591863 2593719 1 rpoD RNA polymerase sigma factor RpoD Proteus mirabilis HI4320
40 group_833 PMI_RS17955 3946115 3946969 1 rpoH RNA polymerase sigma factor RpoH Proteus mirabilis HI4320
41 group_2339 PMI_RS18450 4051575 4052123 -1 RNA polymerase sigma factor Proteus mirabilis HI4320