Homologs in group_2307

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_17720 FBDBKF_17720 100.0 Morganella morganii S1 rpoE DNA-directed RNA polymerase specialized sigma subunit, sigma24 family
EHELCC_09745 EHELCC_09745 100.0 Morganella morganii S2 rpoE DNA-directed RNA polymerase specialized sigma subunit, sigma24 family
LHKJJB_07630 LHKJJB_07630 100.0 Morganella morganii S3 rpoE DNA-directed RNA polymerase specialized sigma subunit, sigma24 family
HKOGLL_07180 HKOGLL_07180 100.0 Morganella morganii S5 rpoE DNA-directed RNA polymerase specialized sigma subunit, sigma24 family
F4V73_RS15240 F4V73_RS15240 92.2 Morganella psychrotolerans - RNA polymerase sigma factor
PMI_RS18450 PMI_RS18450 56.7 Proteus mirabilis HI4320 - RNA polymerase sigma factor

Distribution of the homologs in the orthogroup group_2307

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2307

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P23484 1.62e-16 76 30 3 163 1 fecI Ferric citrate uptake sigma factor FecI Escherichia coli (strain K12)
A0R2D4 2.3e-08 55 28 4 148 1 sigE ECF RNA polymerase sigma factor SigE Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)
O07627 5.81e-08 53 24 3 169 2 ylaC RNA polymerase sigma factor YlaC Bacillus subtilis (strain 168)
P9WGG7 1.52e-07 53 28 5 161 1 sigE ECF RNA polymerase sigma factor SigE Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WGG6 1.52e-07 53 28 5 161 3 sigE ECF RNA polymerase sigma factor SigE Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
H8F0N6 1.52e-07 53 28 5 161 1 sigE ECF RNA polymerase sigma factor SigE Mycobacterium tuberculosis (strain ATCC 35801 / TMC 107 / Erdman)
Q06198 9.32e-07 50 28 4 160 1 algU RNA polymerase sigma-H factor Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q44583 8.79e-05 44 30 2 130 3 nccH RNA polymerase sigma factor NccH Alcaligenes xylosoxydans xylosoxydans
O07582 0.000194 43 25 2 162 1 sigM ECF RNA polymerase sigma factor SigM Bacillus subtilis (strain 168)
B3Q6P8 0.000223 43 30 5 137 1 ecfG ECF RNA polymerase sigma factor EcfG Rhodopseudomonas palustris (strain TIE-1)
P38133 0.000499 42 25 4 155 1 sigE RNA polymerase sigma-E factor Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
Q9WX11 0.001 42 27 5 145 1 bldN ECF RNA polymerase sigma factor BldN Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)

  • Number of RefSeq hits:

General

Source Morganella morganii S4
Locus tag NLDBIP_10125
Feature type CDS
Gene rpoE
Product DNA-directed RNA polymerase specialized sigma subunit, sigma24 family
Location 180620 - 181162 (strand: 1)
Length 543 (nucleotides) / 180 (amino acids)

Contig

Accession ZDB_524
Length 215957 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2307
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF04542 Sigma-70 region 2
PF08281 Sigma-70, region 4

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1595 Transcription (K) K DNA-directed RNA polymerase specialized sigma subunit, sigma24 family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03088 RNA polymerase sigma-70 factor, ECF subfamily - -

Protein Sequence

MTTEKSVSRLIAGAYHSTYHQLVRFFHKRLGNSQDARDLSQDVFARWLKGGNETSVQETRAFLFKIANNVLTDHWRHSRRKGRDRVSEWDDSLTEKVAQAHADPQVQLEHRQRLDRLYQVLNELPPRQREAFVLYRFDGLSQSDIAEQMDISVSMVEKHIARALLQCKRAMNAAEQKDGE

Flanking regions ( +/- flanking 50bp)

AATGCGTAATGACTCCTTCAATTACGATGACTTCGATACACACCAGAAAAATGACGACTGAAAAATCGGTAAGCAGGCTTATCGCCGGAGCTTATCACTCAACCTACCATCAGCTTGTCCGCTTCTTCCATAAGCGGCTGGGCAACAGTCAGGATGCACGGGATTTGTCGCAGGATGTGTTTGCCCGCTGGCTCAAAGGCGGCAACGAGACATCTGTGCAGGAAACCCGCGCGTTCCTGTTTAAGATCGCCAACAATGTGCTGACCGACCACTGGCGTCACAGCCGGCGGAAGGGCCGAGACCGGGTCAGTGAATGGGATGATTCACTGACAGAGAAAGTGGCACAGGCACACGCCGATCCTCAGGTACAGCTCGAACACCGGCAGCGGCTGGACAGGCTGTATCAGGTGCTGAATGAACTGCCGCCCCGTCAGCGCGAAGCCTTTGTGCTTTACCGGTTTGACGGACTTTCGCAAAGTGACATTGCCGAACAGATGGATATTTCTGTCAGTATGGTGGAAAAGCATATCGCCCGCGCCCTGCTGCAATGTAAACGCGCCATGAATGCCGCAGAACAGAAGGACGGGGAATGACAGACCGGCGGGAGCAGGACGAACGGGAAGACGCCGCCGCACTGTGGTTT