Orthogroup:group_2317


Homologs in group_2317

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_17530 FBDBKF_17530 Morganella morganii S1 rpoD RNA polymerase sigma factor RpoD
EHELCC_17425 EHELCC_17425 Morganella morganii S2 rpoD RNA polymerase sigma factor RpoD
NLDBIP_17770 NLDBIP_17770 Morganella morganii S4 rpoD RNA polymerase sigma factor RpoD
LHKJJB_17690 LHKJJB_17690 Morganella morganii S3 rpoD RNA polymerase sigma factor RpoD
HKOGLL_17700 HKOGLL_17700 Morganella morganii S5 rpoD RNA polymerase sigma factor RpoD
F4V73_RS16710 F4V73_RS16710 Morganella psychrotolerans rpoD RNA polymerase sigma factor RpoD
PMI_RS11730 PMI_RS11730 Proteus mirabilis HI4320 rpoD RNA polymerase sigma factor RpoD

Distribution of group_2317 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_2317 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_2317

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_2317.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 rpoD 7

Product

# Product Occurence
1 RNA polymerase sigma factor RpoD 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0568 7 K Transcription (K) DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K03086 7 RNA polymerase primary sigma factor Flagellar assembly -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00140 7 Sigma-70 factor, region 1.2
PF03979 7 Sigma-70 factor, region 1.1
PF04539 7 Sigma-70 region 3
PF04542 7 Sigma-70 region 2
PF04545 7 Sigma-70, region 4
PF04546 7 Sigma-70, non-essential region

Annotations of the 160 SwissProt hits

Annotation Number of occurrences
Probable RNA polymerase sigma-C factor 1
Putative RNA polymerase sigma-G factor (Fragment) 1
RNA polymerase principal sigma factor HrdA 1
RNA polymerase principal sigma factor HrdB 2
RNA polymerase principal sigma factor HrdC 1
RNA polymerase principal sigma factor HrdD 3
RNA polymerase sigma factor FliA 7
RNA polymerase sigma factor RpoD 35
RNA polymerase sigma factor RpoD (Fragment) 1
RNA polymerase sigma factor RpoH 18
RNA polymerase sigma factor RpoS 11
RNA polymerase sigma factor SigA 36
RNA polymerase sigma factor SigA (Fragment) 1
RNA polymerase sigma factor SigA1 1
RNA polymerase sigma factor SigA2 1
RNA polymerase sigma factor SigA3 1
RNA polymerase sigma factor SigA4 1
RNA polymerase sigma factor SigB 3
RNA polymerase sigma factor SigF 2
RNA polymerase sigma factor WhiG 1
RNA polymerase sigma factor for flagellar operon 1
RNA polymerase sigma factor sigA 2
RNA polymerase sigma factor sigB 1
RNA polymerase sigma factor sigC 1
RNA polymerase sigma factor sigD, chloroplastic 1
RNA polymerase sigma factor sigE, chloroplastic/mitochondrial 1
RNA polymerase sigma factor sigF, chloroplastic 1
RNA polymerase sigma-28 factor 3
RNA polymerase sigma-35 factor 3
RNA polymerase sigma-B factor 5
RNA polymerase sigma-C factor 2
RNA polymerase sigma-D factor 1
RNA polymerase sigma-E factor 2
RNA polymerase sigma-F factor 5
RNA polymerase sigma-G factor 2
RNA polymerase sigma-K factor 1

Protein length

Min length 616
Max length 631
Mean length (sd) 618.4 (5.6)
Median length 616.0

Protein length distribution