Homologs in group_764

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_03515 FBDBKF_03515 87.6 Morganella morganii S1 rpoH RNA polymerase sigma factor RpoH
EHELCC_07020 EHELCC_07020 87.6 Morganella morganii S2 rpoH RNA polymerase sigma factor RpoH
NLDBIP_07345 NLDBIP_07345 87.6 Morganella morganii S4 rpoH RNA polymerase sigma factor RpoH
LHKJJB_06880 LHKJJB_06880 87.6 Morganella morganii S3 rpoH RNA polymerase sigma factor RpoH
HKOGLL_04050 HKOGLL_04050 87.6 Morganella morganii S5 rpoH RNA polymerase sigma factor RpoH
F4V73_RS11385 F4V73_RS11385 87.6 Morganella psychrotolerans rpoH RNA polymerase sigma factor RpoH

Distribution of the homologs in the orthogroup group_764

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_764

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P50509 0.0 575 98 0 284 3 rpoH RNA polymerase sigma factor RpoH Proteus mirabilis
P11539 2.4e-172 480 83 0 283 3 rpoH RNA polymerase sigma factor RpoH Citrobacter freundii
P0AGB3 2.62e-172 480 81 0 283 1 rpoH RNA polymerase sigma factor RpoH Escherichia coli (strain K12)
P0AGB4 2.62e-172 480 81 0 283 3 rpoH RNA polymerase sigma factor RpoH Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AGB5 2.62e-172 480 81 0 283 3 rpoH RNA polymerase sigma factor RpoH Escherichia coli O157:H7
P50510 5.3e-171 477 83 1 284 3 rpoH RNA polymerase sigma factor RpoH Serratia marcescens
P50508 9.03e-167 466 83 1 284 3 rpoH RNA polymerase sigma factor RpoH Enterobacter cloacae
P50511 8.99e-155 436 71 1 283 3 rpoH RNA polymerase sigma factor RpoH Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
O05385 4.5e-152 429 70 0 283 3 rpoH RNA polymerase sigma factor RpoH Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q8DD54 3.54e-151 427 71 2 283 3 rpoH RNA polymerase sigma factor RpoH Vibrio vulnificus (strain CMCP6)
P44404 1.12e-150 425 73 3 282 3 rpoH RNA polymerase sigma factor RpoH Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q8KA76 3.83e-147 416 68 1 285 3 rpoH RNA polymerase sigma factor RpoH Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Q89B27 4.11e-140 399 68 2 282 3 rpoH RNA polymerase sigma factor RpoH Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
P42378 7.19e-118 342 62 2 280 3 rpoH RNA polymerase sigma factor RpoH Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q07083 8.69e-64 205 41 5 274 3 sigC RNA polymerase sigma-C factor Myxococcus xanthus
Q01624 1.63e-59 194 41 6 267 3 sigB RNA polymerase sigma-B factor Stigmatella aurantiaca (strain DW4/3-1)
B8H3C3 1.9e-59 194 39 6 287 3 rpoH RNA polymerase sigma factor RpoH Caulobacter vibrioides (strain NA1000 / CB15N)
P0CAW9 1.9e-59 194 39 6 287 1 rpoH RNA polymerase sigma factor RpoH Caulobacter vibrioides (strain ATCC 19089 / CIP 103742 / CB 15)
P50512 8.74e-57 187 40 6 290 3 rpoH RNA polymerase sigma factor RpoH Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4)
P50507 1.29e-53 179 37 5 284 3 rpoH RNA polymerase sigma factor RpoH Rhizobium radiobacter
P19433 8.58e-49 165 40 5 232 3 sigB RNA polymerase sigma-B factor Myxococcus xanthus
O66381 2.06e-32 125 31 9 279 3 sigA RNA polymerase sigma factor SigA Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
P52328 9.23e-31 121 31 8 269 3 sigA RNA polymerase sigma factor SigA Bacillus sp.
O33662 1.36e-30 120 30 8 277 3 sigA RNA polymerase sigma factor SigA Streptococcus mutans serotype c (strain ATCC 700610 / UA159)
P0A4J0 1.91e-30 120 30 10 278 3 sigA RNA polymerase sigma factor SigA Streptococcus pneumoniae (strain ATCC BAA-255 / R6)
P0A4I9 1.91e-30 120 30 10 278 3 sigA RNA polymerase sigma factor SigA Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
Q92BQ6 2e-30 120 30 8 282 3 sigA RNA polymerase sigma factor SigA Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262)
P52331 2.44e-30 120 30 8 282 3 sigA RNA polymerase sigma factor SigA Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
P52329 2.72e-30 120 30 7 273 3 sigA RNA polymerase sigma factor SigA Enterococcus faecalis (strain ATCC 700802 / V583)
P06224 8.32e-30 118 29 8 282 1 sigA RNA polymerase sigma factor SigA Bacillus subtilis (strain 168)
Q9KI19 5.04e-29 116 31 6 269 1 rpoS RNA polymerase sigma factor RpoS Coxiella burnetii (strain RSA 493 / Nine Mile phase I)
Q8CP24 7.15e-29 116 29 8 274 3 sigA RNA polymerase sigma factor SigA Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
Q5HNY7 7.15e-29 116 29 8 274 3 sigA RNA polymerase sigma factor SigA Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
P0A0I9 7.15e-29 116 29 8 273 3 sigA RNA polymerase sigma factor SigA Staphylococcus aureus (strain MW2)
Q6G905 7.15e-29 116 29 8 273 3 sigA RNA polymerase sigma factor SigA Staphylococcus aureus (strain MSSA476)
Q6GGD8 7.15e-29 116 29 8 273 3 sigA RNA polymerase sigma factor SigA Staphylococcus aureus (strain MRSA252)
P0A0I8 7.15e-29 116 29 8 273 3 sigA RNA polymerase sigma factor SigA Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q5HFJ9 7.15e-29 116 29 8 273 3 sigA RNA polymerase sigma factor SigA Staphylococcus aureus (strain COL)
P0A0J0 7.15e-29 116 29 8 273 1 sigA RNA polymerase sigma factor SigA Staphylococcus aureus (strain NCTC 8325 / PS 47)
Q99TT5 8.96e-29 115 29 8 273 1 sigA RNA polymerase sigma factor SigA Staphylococcus aureus (strain N315)
P58290 1.22e-28 115 29 8 278 3 sigA RNA polymerase sigma factor SigA (Fragment) Lactococcus lactis subsp. cremoris
Q04506 3.12e-28 114 29 8 278 3 sigA RNA polymerase sigma factor SigA Lactococcus lactis subsp. lactis (strain IL1403)
P45684 3.49e-28 113 28 8 285 1 rpoS RNA polymerase sigma factor RpoS Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P77994 8.38e-28 114 29 7 276 1 sigA RNA polymerase sigma factor SigA Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
P33118 8.79e-26 107 33 8 230 3 sigB RNA polymerase sigma factor SigB Corynebacterium diphtheriae (strain ATCC 700971 / NCTC 13129 / Biotype gravis)
Q9ZMY3 7.96e-25 107 29 12 304 3 rpoD RNA polymerase sigma factor RpoD Helicobacter pylori (strain J99 / ATCC 700824)
P55993 2.37e-24 105 29 12 304 1 rpoD RNA polymerase sigma factor RpoD Helicobacter pylori (strain ATCC 700392 / 26695)
O51804 2.01e-23 100 29 9 278 3 rpoS RNA polymerase sigma factor RpoS Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
P33656 3.74e-23 100 29 8 282 3 sigA RNA polymerase sigma factor SigA Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / IAM 19013 / LMG 5710 / NBRC 13948 / NRRL B-527 / VKM B-1787 / 2291 / W)
Q8PG33 1.3e-22 100 30 11 273 3 rpoD RNA polymerase sigma factor RpoD Xanthomonas axonopodis pv. citri (strain 306)
P47765 1.4e-22 98 27 7 271 3 rpoS RNA polymerase sigma factor RpoS Yersinia enterocolitica
P9WGI1 1.72e-22 100 27 9 307 1 sigA RNA polymerase sigma factor SigA Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WGI0 1.72e-22 100 27 9 307 3 sigA RNA polymerase sigma factor SigA Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P0A603 1.72e-22 100 27 9 307 3 sigA RNA polymerase sigma factor SigA Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
Q31QR8 3.45e-22 97 29 9 289 3 sigA4 RNA polymerase sigma factor SigA4 Synechococcus elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805)
Q8P4H2 3.76e-22 99 30 11 276 3 rpoD RNA polymerase sigma factor RpoD Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)
P35540 3.9e-22 97 26 8 283 3 rpoS RNA polymerase sigma factor RpoS Shigella flexneri
P13445 3.98e-22 97 26 8 283 1 rpoS RNA polymerase sigma factor RpoS Escherichia coli (strain K12)
P27785 4.18e-22 97 28 10 292 3 sigA RNA polymerase sigma factor SigA Kitasatospora aureofaciens
P0DM81 5.18e-22 97 26 8 283 3 rpoS RNA polymerase sigma factor RpoS Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
F5ZTT9 5.18e-22 97 26 8 283 3 rpoS RNA polymerase sigma factor RpoS Salmonella typhimurium (strain ATCC 68169 / UK-1)
P0A2E6 5.18e-22 97 26 8 283 3 rpoS RNA polymerase sigma factor RpoS Salmonella typhi
D0ZVL4 5.18e-22 97 26 8 283 1 rpoS RNA polymerase sigma factor RpoS Salmonella typhimurium (strain 14028s / SGSC 2262)
P0A2E7 5.18e-22 97 26 8 283 3 rpoS RNA polymerase sigma factor RpoS Salmonella dublin
P9WGI5 5.87e-22 96 32 10 245 1 sigB RNA polymerase sigma factor SigB Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WGI4 5.87e-22 96 32 10 245 3 sigB RNA polymerase sigma factor SigB Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P56835 2.26e-21 97 29 6 238 3 sigA RNA polymerase sigma factor SigA Chlamydia muridarum (strain MoPn / Nigg)
P43766 2.31e-21 97 29 7 238 3 rpoD RNA polymerase sigma factor RpoD Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q9Z7F0 4.54e-21 96 28 6 238 3 sigA RNA polymerase sigma factor SigA Chlamydia pneumoniae
Q9PDM9 4.6e-21 96 28 10 280 3 rpoD RNA polymerase sigma factor RpoD Xylella fastidiosa (strain 9a5c)
P18333 7.21e-21 95 28 6 238 1 sigA RNA polymerase sigma factor SigA Chlamydia trachomatis serovar D (strain ATCC VR-885 / DSM 19411 / UW-3/Cx)
Q9LD95 8.02e-21 95 28 5 239 1 SIGF RNA polymerase sigma factor sigF, chloroplastic Arabidopsis thaliana
Q87DT7 9.8e-21 95 28 6 241 3 rpoD RNA polymerase sigma factor RpoD Xylella fastidiosa (strain Temecula1 / ATCC 700964)
P18184 4.21e-20 91 29 7 272 3 hrdC RNA polymerase principal sigma factor HrdC Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
P77951 4.32e-20 93 27 9 302 1 sigA RNA polymerase sigma factor SigA Streptomyces griseus
B1VXR4 4.32e-20 93 27 9 302 2 hrdB RNA polymerase principal sigma factor HrdB Streptomyces griseus subsp. griseus (strain JCM 4626 / CBS 651.72 / NBRC 13350 / KCC S-0626 / ISP 5235)
Q59914 4.64e-20 91 29 7 264 3 hrdD RNA polymerase principal sigma factor HrdD Streptomyces griseus
P18183 5.04e-20 92 27 9 302 1 hrdB RNA polymerase principal sigma factor HrdB Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
P18249 5.95e-20 91 29 6 245 3 hrdD RNA polymerase principal sigma factor HrdD Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
P57163 6.69e-20 92 28 9 258 3 rpoD RNA polymerase sigma factor RpoD Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q60012 8.35e-20 90 29 6 245 3 hrdD RNA polymerase principal sigma factor HrdD Streptomyces viridifaciens
Q9EZJ8 1.05e-19 91 27 7 258 1 sigA RNA polymerase sigma factor SigA Thermus aquaticus
P32001 1.11e-19 92 28 9 258 3 rpoD RNA polymerase sigma factor RpoD Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Q1RKH7 1.11e-19 92 28 7 240 3 rpoD RNA polymerase sigma factor RpoD Rickettsia bellii (strain RML369-C)
P52324 1.54e-19 91 27 7 236 3 rpoD RNA polymerase sigma factor RpoD Caulobacter vibrioides (strain ATCC 19089 / CIP 103742 / CB 15)
P52323 1.75e-19 91 29 8 240 3 rpoD RNA polymerase sigma factor RpoD Borreliella burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 / B31)
Q4UJT1 1.87e-19 91 28 7 240 3 rpoD RNA polymerase sigma factor RpoD Rickettsia felis (strain ATCC VR-1525 / URRWXCal2)
P17531 2.08e-19 91 28 7 235 3 rpoD RNA polymerase sigma factor RpoD Myxococcus xanthus
Q92FZ8 2.09e-19 91 28 7 240 3 rpoD RNA polymerase sigma factor RpoD Rickettsia conorii (strain ATCC VR-613 / Malish 7)
P33451 2.13e-19 91 28 7 240 3 rpoD RNA polymerase sigma factor RpoD Rickettsia prowazekii (strain Madrid E)
Q68VQ5 2.58e-19 90 28 7 240 3 rpoD RNA polymerase sigma factor RpoD Rickettsia typhi (strain ATCC VR-144 / Wilmington)
Q59753 2.72e-19 90 28 7 235 3 rpoD RNA polymerase sigma factor RpoD Rhizobium meliloti (strain 1021)
P59117 2.75e-19 90 28 8 260 3 rpoD RNA polymerase sigma factor RpoD Leptospira interrogans serogroup Icterohaemorrhagiae serovar Lai (strain 56601)
P61540 2.75e-19 90 28 8 260 3 rpoD RNA polymerase sigma factor RpoD Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni (strain Fiocruz L1-130)
Q2K619 2.96e-19 90 28 7 235 1 rpoD RNA polymerase sigma factor RpoD Rhizobium etli (strain ATCC 51251 / DSM 11541 / JCM 21823 / NBRC 15573 / CFN 42)
P33452 3.25e-19 90 28 7 235 3 rpoD RNA polymerase sigma factor RpoD Agrobacterium fabrum (strain C58 / ATCC 33970)
Q83BB6 4.82e-19 90 29 7 242 1 rpoD RNA polymerase sigma factor RpoD Coxiella burnetii (strain RSA 493 / Nine Mile phase I)
P18182 5.37e-19 89 28 10 294 1 hrdA RNA polymerase principal sigma factor HrdA Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
D5AQI9 6.48e-19 90 27 7 236 3 rpoD RNA polymerase sigma factor RpoD Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003)
P00579 6.86e-19 89 28 9 261 1 rpoD RNA polymerase sigma factor RpoD Escherichia coli (strain K12)
P0A2E3 6.94e-19 89 28 9 261 3 rpoD RNA polymerase sigma factor RpoD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A2E4 6.94e-19 89 28 9 261 3 rpoD RNA polymerase sigma factor RpoD Salmonella typhi
O24744 9.73e-19 89 28 7 235 3 rpoD RNA polymerase sigma factor RpoD Shewanella violacea (strain JCM 10179 / CIP 106290 / LMG 19151 / DSS12)
P38023 1.16e-18 88 28 9 240 3 sigA1 RNA polymerase sigma factor SigA1 Synechococcus elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805)
Q89B10 2.07e-18 88 28 7 238 3 rpoD RNA polymerase sigma factor RpoD Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
P26480 4e-18 87 29 8 235 1 rpoD RNA polymerase sigma factor RpoD Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P0CZ15 4.16e-18 87 27 7 236 2 rpoD RNA polymerase sigma factor RpoD Rhodobacter capsulatus
P52322 8.06e-18 85 27 6 237 3 sigA RNA polymerase sigma factor SigA Microcystis aeruginosa
P52325 1.02e-17 86 28 8 256 3 rpoD RNA polymerase sigma factor RpoD Neisseria gonorrhoeae
P26683 1.09e-17 85 27 8 242 1 sigA RNA polymerase sigma factor SigA Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576)
Q72L95 1.43e-17 85 27 7 258 1 sigA RNA polymerase sigma factor SigA Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27)
P52326 1.6e-17 85 29 8 235 3 rpoD RNA polymerase sigma factor RpoD Pseudomonas protegens (strain DSM 19095 / LMG 27888 / CFBP 6595 / CHA0)
Q59996 1.79e-17 85 28 8 253 3 sigC Probable RNA polymerase sigma-C factor Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
P74565 2e-17 85 28 8 238 1 sigA RNA polymerase sigma factor SigA Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
P52327 2.68e-17 85 28 10 260 3 rpoD RNA polymerase sigma factor RpoD Pseudomonas putida
Q31ME3 4.55e-17 83 27 6 234 1 sigA2 RNA polymerase sigma factor SigA2 Synechococcus elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805)
Q03065 9.93e-17 82 26 8 279 3 sigB RNA polymerase sigma-B factor Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576)
P26764 1.07e-16 80 29 9 269 3 sigF RNA polymerase sigma-F factor Bacillus licheniformis
P47491 1.86e-16 82 28 9 274 3 sigA RNA polymerase sigma factor SigA Mycoplasma genitalium (strain ATCC 33530 / DSM 19775 / NCTC 10195 / G37)
O83506 2.94e-16 82 26 7 240 3 rpoD RNA polymerase sigma factor RpoD Treponema pallidum (strain Nichols)
Q31QG5 4.86e-16 80 24 7 309 3 sigA3 RNA polymerase sigma factor SigA3 Synechococcus elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805)
Q03066 7.65e-16 80 27 8 251 3 sigC RNA polymerase sigma-C factor Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576)
P78022 1.03e-15 80 27 9 280 3 sigA RNA polymerase sigma factor SigA Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1)
Q0J7T6 1.13e-15 80 28 8 254 2 SIGA RNA polymerase sigma factor sigA Oryza sativa subsp. japonica
P19940 1.95e-15 77 28 8 263 1 sigG RNA polymerase sigma-G factor Bacillus subtilis (strain 168)
O22056 2.22e-15 79 26 9 262 2 SIGB RNA polymerase sigma factor sigB Arabidopsis thaliana
O24629 6.15e-15 77 28 7 242 1 SIGA RNA polymerase sigma factor sigA Arabidopsis thaliana
P35145 9.26e-15 75 28 9 268 3 sigF RNA polymerase sigma-F factor Priestia megaterium
P62179 1.16e-13 72 28 8 257 1 sigE RNA polymerase sigma-35 factor Bacillus thuringiensis subsp. kurstaki
P62178 1.16e-13 72 28 8 257 3 sigE RNA polymerase sigma-35 factor Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711)
P62177 1.16e-13 72 28 8 257 3 sigE RNA polymerase sigma-35 factor Bacillus anthracis
P33658 1.17e-13 72 27 9 259 3 sigG RNA polymerase sigma-G factor Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / IAM 19013 / LMG 5710 / NBRC 13948 / NRRL B-527 / VKM B-1787 / 2291 / W)
P06222 1.22e-13 72 41 1 97 1 sigE RNA polymerase sigma-E factor Bacillus subtilis (strain 168)
P07860 1.36e-13 72 29 9 259 1 sigF RNA polymerase sigma-F factor Bacillus subtilis (strain 168)
P43344 3.7e-13 70 27 7 207 3 rpoD RNA polymerase sigma factor RpoD (Fragment) Serratia marcescens
P06574 1.21e-12 69 29 9 262 1 sigB RNA polymerase sigma-B factor Bacillus subtilis (strain 168)
Q9ZSL6 5.67e-12 68 26 6 239 2 SIGD RNA polymerase sigma factor sigD, chloroplastic Arabidopsis thaliana
P33657 1.58e-11 66 36 1 97 3 sigE RNA polymerase sigma-E factor Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / IAM 19013 / LMG 5710 / NBRC 13948 / NRRL B-527 / VKM B-1787 / 2291 / W)
P12254 5.47e-11 65 25 11 272 1 sigK RNA polymerase sigma-K factor Bacillus subtilis (strain 168)
O24621 5.88e-11 66 25 6 250 2 SIGC RNA polymerase sigma factor sigC Arabidopsis thaliana
P9WGI3 6.04e-10 62 27 8 226 1 sigF RNA polymerase sigma factor SigF Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WGI2 6.04e-10 62 27 8 226 3 sigF RNA polymerase sigma factor SigF Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P62181 6.56e-10 61 24 7 257 1 sigK RNA polymerase sigma-28 factor Bacillus thuringiensis subsp. kurstaki
P62180 6.56e-10 61 24 7 257 3 sigK RNA polymerase sigma-28 factor Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711)
P62182 6.56e-10 61 24 7 257 3 sigK RNA polymerase sigma-28 factor Bacillus anthracis
P37971 6.62e-09 59 25 5 230 3 sigF RNA polymerase sigma-F factor Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
P0AEM6 4.96e-08 56 27 8 216 1 fliA RNA polymerase sigma factor FliA Escherichia coli (strain K12)
P0AEM7 4.96e-08 56 27 8 216 3 fliA RNA polymerase sigma factor FliA Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AEM8 4.96e-08 56 27 8 216 3 fliA RNA polymerase sigma factor FliA Escherichia coli O157:H7
P26768 1.07e-07 53 32 2 103 3 None Putative RNA polymerase sigma-G factor (Fragment) Bacillus thuringiensis subsp. kurstaki
P37970 1.44e-07 55 26 7 232 3 sigF RNA polymerase sigma-F factor Kitasatospora aureofaciens
Q9ZNX9 9.87e-07 53 26 12 246 1 SIGE RNA polymerase sigma factor sigE, chloroplastic/mitochondrial Arabidopsis thaliana
Q9K5J6 1.09e-06 52 24 8 240 3 sigB RNA polymerase sigma-B factor Bacillus anthracis
P0A2E8 1.77e-06 51 28 8 205 1 fliA RNA polymerase sigma factor FliA Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A2E9 1.77e-06 51 28 8 205 3 fliA RNA polymerase sigma factor FliA Salmonella typhi
P17211 1.03e-05 49 26 10 244 3 whiG RNA polymerase sigma factor WhiG Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
P52621 1.51e-05 48 25 7 205 3 fliA RNA polymerase sigma factor FliA Yersinia enterocolitica
P17869 2.79e-05 47 35 1 81 1 sigH RNA polymerase sigma-H factor Bacillus subtilis (strain 168)
P02964 0.000135 45 35 1 81 3 sigH RNA polymerase sigma-H factor Bacillus licheniformis

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS17955
Feature type CDS
Gene rpoH
Product RNA polymerase sigma factor RpoH
Location 3946115 - 3946969 (strand: 1)
Length 855 (nucleotides) / 284 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_764
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF00140 Sigma-70 factor, region 1.2
PF04542 Sigma-70 region 2
PF04545 Sigma-70, region 4

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0568 Transcription (K) K DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03089 RNA polymerase sigma-32 factor - -

Protein Sequence

MTKEMQSLALVPQGSIEAYIRAANSYPMLTAEEEKELAERLHYEGDLEAAKTLILSHLRFVIHVARSYSGYGLPQADLIQEGNIGLMKAVRRFNPEVGVRLVSFAVHWIKAEIHEYVLRNWRIVKVATTKSQRKLFFNLRKNKKRLGWFNQDEVELVAKELGVSESDVREMESRMSAQDMAFDMSADDSDDSHPVAPVLFLEDKSSDFADGIEEDNWDNHAADRLTLAIKTLDERSQDIIRARWLEDDNKSTLQELADKYGVSAERVRQLEKNAMKKLRLAIED

Flanking regions ( +/- flanking 50bp)

ACCATACAGTATTAATATTAATTATCTATTTGATTTTCATGAGGATTTGAATGACAAAAGAAATGCAATCCTTAGCATTGGTTCCGCAAGGCAGCATTGAAGCGTATATCCGTGCAGCCAATTCCTATCCGATGTTAACGGCAGAGGAAGAAAAGGAACTGGCTGAACGGCTGCATTACGAGGGCGATTTGGAAGCAGCGAAAACGCTGATCCTTTCTCATTTACGCTTCGTTATTCATGTTGCTCGCAGTTATTCAGGATATGGTTTACCTCAGGCGGATCTTATCCAAGAAGGTAATATTGGTTTGATGAAAGCGGTGCGTCGCTTTAACCCTGAAGTTGGGGTTAGACTGGTTTCTTTCGCCGTGCATTGGATCAAAGCCGAAATTCATGAATATGTGTTACGTAATTGGCGTATCGTGAAAGTCGCGACAACGAAATCACAGCGTAAACTGTTCTTTAATTTAAGAAAAAACAAAAAACGCTTAGGGTGGTTTAACCAAGATGAAGTCGAGCTAGTTGCGAAAGAGCTTGGGGTTTCTGAGAGCGATGTGCGTGAAATGGAATCTCGCATGTCGGCACAAGATATGGCATTTGACATGAGTGCTGATGATAGTGATGACTCACATCCTGTAGCTCCGGTGCTATTCTTAGAAGATAAATCTTCTGACTTTGCTGATGGTATTGAAGAAGATAACTGGGATAACCATGCAGCTGACCGACTGACTTTAGCGATAAAAACACTGGATGAACGTAGCCAAGACATTATCCGCGCTCGCTGGTTAGAAGATGATAATAAATCAACTTTACAGGAGCTTGCAGATAAATATGGTGTTTCTGCTGAGCGAGTTCGCCAGTTAGAAAAAAATGCGATGAAAAAATTGCGTTTAGCGATTGAAGATTAATCACATTTTAAAGCCAATCCAACCTCTCTGATTGTAGAGTATGATATAAA