Homologs in group_2339

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_17720 FBDBKF_17720 56.7 Morganella morganii S1 rpoE DNA-directed RNA polymerase specialized sigma subunit, sigma24 family
EHELCC_09745 EHELCC_09745 56.7 Morganella morganii S2 rpoE DNA-directed RNA polymerase specialized sigma subunit, sigma24 family
NLDBIP_10125 NLDBIP_10125 56.7 Morganella morganii S4 rpoE DNA-directed RNA polymerase specialized sigma subunit, sigma24 family
LHKJJB_07630 LHKJJB_07630 56.7 Morganella morganii S3 rpoE DNA-directed RNA polymerase specialized sigma subunit, sigma24 family
HKOGLL_07180 HKOGLL_07180 56.7 Morganella morganii S5 rpoE DNA-directed RNA polymerase specialized sigma subunit, sigma24 family
F4V73_RS15240 F4V73_RS15240 58.7 Morganella psychrotolerans - RNA polymerase sigma factor

Distribution of the homologs in the orthogroup group_2339

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2339

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P23484 7.03e-19 82 32 2 153 1 fecI Ferric citrate uptake sigma factor FecI Escherichia coli (strain K12)
O07582 5.37e-08 53 27 4 174 1 sigM ECF RNA polymerase sigma factor SigM Bacillus subtilis (strain 168)
P37978 3.94e-07 51 25 4 189 1 cnrH RNA polymerase sigma factor CnrH Cupriavidus metallidurans (strain ATCC 43123 / DSM 2839 / NBRC 102507 / CH34)
A0R2D4 9.33e-07 50 26 4 142 1 sigE ECF RNA polymerase sigma factor SigE Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)
O07627 1.35e-06 49 27 2 168 2 ylaC RNA polymerase sigma factor YlaC Bacillus subtilis (strain 168)
A0A0H3CCX2 1.69e-06 49 28 4 132 2 sigF ECF RNA polymerase sigma factor SigF Caulobacter vibrioides (strain NA1000 / CB15N)
P9WGG7 2.06e-06 50 26 4 142 1 sigE ECF RNA polymerase sigma factor SigE Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WGG6 2.06e-06 50 26 4 142 3 sigE ECF RNA polymerase sigma factor SigE Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
H8F0N6 2.06e-06 50 26 4 142 1 sigE ECF RNA polymerase sigma factor SigE Mycobacterium tuberculosis (strain ATCC 35801 / TMC 107 / Erdman)
P37929 4.06e-05 45 30 7 156 3 hrpL RNA polymerase sigma factor HrpL Pseudomonas syringae pv. syringae
B3Q6P8 0.000159 43 27 6 159 1 ecfG ECF RNA polymerase sigma factor EcfG Rhodopseudomonas palustris (strain TIE-1)
A0QTP2 0.000613 42 28 5 147 1 sigH ECF RNA polymerase sigma factor SigH Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS18450
Feature type CDS
Gene -
Product RNA polymerase sigma factor
Location 4051575 - 4052123 (strand: -1)
Length 549 (nucleotides) / 182 (amino acids)
In genomic island -

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_2339
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF04542 Sigma-70 region 2
PF08281 Sigma-70, region 4

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1595 Transcription (K) K DNA-directed RNA polymerase specialized sigma subunit, sigma24 family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K23514 RNA polymerase sigma-19 factor, ECF subfamily Two-component system -

Protein Sequence

MTSDKSLAQKISCAYQSTYGQLVRFFQKRTGNHHDADDLSQDVFTLWLNRKEQTPVQEQRAFLFKIANHVLIDHWRKNQKQKNIYQEDYQLEDAVQTYTTELDPGHVLEHQQRLDLLTQAIDTLPPRRREAFILYRFDGLSQSEIAEQMEISISMVEKHIAAALLHCKRYVDAGQEKCTNDE

Flanking regions ( +/- flanking 50bp)

TAGAAGCAGTAAGAGCTTATTATTTCACTCTTTTTTAAACACCAGAGACTATGACTAGCGATAAATCATTAGCACAAAAAATCAGTTGTGCCTACCAATCAACCTATGGTCAGCTTGTACGTTTTTTCCAAAAACGCACGGGTAATCACCATGATGCGGATGATTTGTCTCAAGATGTGTTTACACTATGGCTAAATCGAAAAGAACAAACTCCTGTCCAAGAGCAGCGTGCTTTTTTATTTAAAATAGCGAACCACGTTTTGATCGATCATTGGAGGAAAAACCAAAAACAAAAAAATATCTATCAAGAAGATTATCAATTAGAAGATGCGGTACAGACCTATACGACAGAGCTTGATCCCGGGCACGTCCTTGAGCATCAACAGCGTTTAGATTTACTGACACAAGCTATTGATACTCTTCCTCCCCGCCGTCGAGAAGCTTTTATTCTTTATCGCTTTGATGGATTATCACAAAGCGAAATTGCAGAACAAATGGAAATTTCGATAAGCATGGTAGAGAAACATATTGCCGCAGCACTATTACATTGTAAAAGATATGTCGATGCAGGACAGGAGAAATGCACCAATGACGAGTAAGTCGGGAAATCAACCTCACACAGATGAGGCGCCTGCAACGCTTTTGGCAG