Orthogroup:group_520


Homologs in group_520

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_00515 FBDBKF_00515 Morganella morganii S1 fliA DNA-directed RNA polymerase specialized sigma subunit
EHELCC_01030 EHELCC_01030 Morganella morganii S2 fliA DNA-directed RNA polymerase specialized sigma subunit
NLDBIP_02430 NLDBIP_02430 Morganella morganii S4 fliA DNA-directed RNA polymerase specialized sigma subunit
LHKJJB_03945 LHKJJB_03945 Morganella morganii S3 fliA DNA-directed RNA polymerase specialized sigma subunit
HKOGLL_03100 HKOGLL_03100 Morganella morganii S5 fliA DNA-directed RNA polymerase specialized sigma subunit
F4V73_RS06525 F4V73_RS06525 Morganella psychrotolerans - RNA polymerase sigma factor FliA
PMI_RS07905 PMI_RS07905 Proteus mirabilis HI4320 - RNA polymerase sigma factor FliA

Distribution of group_520 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_520 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_520

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_520.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 fliA 5
2 - 2

Product

# Product Occurence
1 DNA-directed RNA polymerase specialized sigma subunit 5
2 RNA polymerase sigma factor FliA 2

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1191 7 K Transcription (K) DNA-directed RNA polymerase specialized sigma subunit

Kegg Ortholog Annotation(s)

Pfam domain Annotation(s)

Domain ID Occurences Description
PF04539 7 Sigma-70 region 3
PF04542 7 Sigma-70 region 2
PF04545 7 Sigma-70, region 4

Virulence factor Annotation(s)

VF gene ID Occurences Protein VF ID Category
VFG002319 7 flagellar biosynthesis sigma factor VF0394 Motility

Annotations of the 144 SwissProt hits

Annotation Number of occurrences
Probable RNA polymerase sigma-C factor 1
Putative RNA polymerase sigma-G factor (Fragment) 1
RNA polymerase principal sigma factor HrdA 1
RNA polymerase principal sigma factor HrdB 2
RNA polymerase principal sigma factor HrdC 1
RNA polymerase principal sigma factor HrdD 3
RNA polymerase sigma factor FliA 7
RNA polymerase sigma factor RpoD 35
RNA polymerase sigma factor RpoD (Fragment) 1
RNA polymerase sigma factor RpoH 9
RNA polymerase sigma factor RpoS 11
RNA polymerase sigma factor SigA 36
RNA polymerase sigma factor SigA (Fragment) 1
RNA polymerase sigma factor SigA1 1
RNA polymerase sigma factor SigA2 1
RNA polymerase sigma factor SigA3 1
RNA polymerase sigma factor SigA4 1
RNA polymerase sigma factor SigB 3
RNA polymerase sigma factor SigF 2
RNA polymerase sigma factor WhiG 1
RNA polymerase sigma factor for flagellar operon 1
RNA polymerase sigma factor sigA 1
RNA polymerase sigma factor sigB 1
RNA polymerase sigma factor sigC 1
RNA polymerase sigma factor sigD, chloroplastic 1
RNA polymerase sigma factor sigE, chloroplastic/mitochondrial 1
RNA polymerase sigma factor sigF, chloroplastic 1
RNA polymerase sigma-35 factor 3
RNA polymerase sigma-B factor 4
RNA polymerase sigma-C factor 1
RNA polymerase sigma-D factor 1
RNA polymerase sigma-E factor 2
RNA polymerase sigma-F factor 5
RNA polymerase sigma-G factor 2

Protein length

Unique protein length 240

Protein length distribution