Homologs in group_444

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_00515 FBDBKF_00515 97.5 Morganella morganii S1 fliA DNA-directed RNA polymerase specialized sigma subunit
EHELCC_01030 EHELCC_01030 97.5 Morganella morganii S2 fliA DNA-directed RNA polymerase specialized sigma subunit
NLDBIP_02430 NLDBIP_02430 97.5 Morganella morganii S4 fliA DNA-directed RNA polymerase specialized sigma subunit
LHKJJB_03945 LHKJJB_03945 97.5 Morganella morganii S3 fliA DNA-directed RNA polymerase specialized sigma subunit
HKOGLL_03100 HKOGLL_03100 97.5 Morganella morganii S5 fliA DNA-directed RNA polymerase specialized sigma subunit
PMI_RS07905 PMI_RS07905 74.2 Proteus mirabilis HI4320 - RNA polymerase sigma factor FliA

Distribution of the homologs in the orthogroup group_444

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_444

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AEM6 6.07e-126 359 72 0 239 1 fliA RNA polymerase sigma factor FliA Escherichia coli (strain K12)
P0AEM7 6.07e-126 359 72 0 239 3 fliA RNA polymerase sigma factor FliA Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AEM8 6.07e-126 359 72 0 239 3 fliA RNA polymerase sigma factor FliA Escherichia coli O157:H7
P52621 2.4e-121 347 72 0 228 3 fliA RNA polymerase sigma factor FliA Yersinia enterocolitica
P0A2E8 1.78e-120 345 69 0 239 1 fliA RNA polymerase sigma factor FliA Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A2E9 1.78e-120 345 69 0 239 3 fliA RNA polymerase sigma factor FliA Salmonella typhi
P29248 8.92e-71 219 51 1 225 3 fliA RNA polymerase sigma factor FliA Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P17211 5.82e-50 167 40 1 225 3 whiG RNA polymerase sigma factor WhiG Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
P10726 4.29e-44 151 36 2 230 1 sigD RNA polymerase sigma-D factor Bacillus subtilis (strain 168)
Q03474 3.95e-36 130 35 2 233 2 lafS RNA polymerase sigma factor for flagellar operon Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
P9WGI3 1.5e-16 79 27 4 230 1 sigF RNA polymerase sigma factor SigF Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WGI2 1.5e-16 79 27 4 230 3 sigF RNA polymerase sigma factor SigF Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P35145 7.41e-16 77 32 7 206 3 sigF RNA polymerase sigma-F factor Priestia megaterium
P37971 8.99e-16 77 28 5 227 3 sigF RNA polymerase sigma-F factor Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
P26764 2.27e-15 76 32 6 205 3 sigF RNA polymerase sigma-F factor Bacillus licheniformis
Q03066 2.34e-15 77 29 5 237 3 sigC RNA polymerase sigma-C factor Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576)
Q9K5J6 2.58e-15 76 29 3 196 3 sigB RNA polymerase sigma-B factor Bacillus anthracis
P07860 3.72e-15 75 29 5 208 1 sigF RNA polymerase sigma-F factor Bacillus subtilis (strain 168)
P06574 4.62e-15 75 30 5 205 1 sigB RNA polymerase sigma-B factor Bacillus subtilis (strain 168)
P37970 5.97e-15 75 29 5 227 3 sigF RNA polymerase sigma-F factor Kitasatospora aureofaciens
P43344 7.07e-15 74 30 7 219 3 rpoD RNA polymerase sigma factor RpoD (Fragment) Serratia marcescens
P52326 1.63e-14 75 29 6 224 3 rpoD RNA polymerase sigma factor RpoD Pseudomonas protegens (strain DSM 19095 / LMG 27888 / CFBP 6595 / CHA0)
P26683 1.78e-14 75 31 5 200 1 sigA RNA polymerase sigma factor SigA Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576)
P26480 1.79e-14 75 28 6 219 1 rpoD RNA polymerase sigma factor RpoD Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
O24744 2.02e-14 75 30 7 219 3 rpoD RNA polymerase sigma factor RpoD Shewanella violacea (strain JCM 10179 / CIP 106290 / LMG 19151 / DSS12)
P52328 2.14e-14 75 29 6 212 3 sigA RNA polymerase sigma factor SigA Bacillus sp.
Q31ME3 2.65e-14 74 29 5 201 1 sigA2 RNA polymerase sigma factor SigA2 Synechococcus elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805)
Q31QG5 3.96e-14 73 30 4 209 3 sigA3 RNA polymerase sigma factor SigA3 Synechococcus elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805)
O33662 5.72e-14 73 30 5 203 3 sigA RNA polymerase sigma factor SigA Streptococcus mutans serotype c (strain ATCC 700610 / UA159)
P0CZ15 9.24e-14 73 27 3 205 2 rpoD RNA polymerase sigma factor RpoD Rhodobacter capsulatus
P38023 1.02e-13 73 31 5 200 3 sigA1 RNA polymerase sigma factor SigA1 Synechococcus elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805)
P52331 1.29e-13 72 28 6 212 3 sigA RNA polymerase sigma factor SigA Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
P00579 1.31e-13 73 30 7 219 1 rpoD RNA polymerase sigma factor RpoD Escherichia coli (strain K12)
P52327 1.33e-13 73 28 6 224 3 rpoD RNA polymerase sigma factor RpoD Pseudomonas putida
Q92BQ6 1.43e-13 72 28 6 212 3 sigA RNA polymerase sigma factor SigA Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262)
P0A2E3 1.51e-13 72 30 7 219 3 rpoD RNA polymerase sigma factor RpoD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A2E4 1.51e-13 72 30 7 219 3 rpoD RNA polymerase sigma factor RpoD Salmonella typhi
Q68VQ5 1.79e-13 72 28 5 220 3 rpoD RNA polymerase sigma factor RpoD Rickettsia typhi (strain ATCC VR-144 / Wilmington)
P06224 1.83e-13 72 29 6 212 1 sigA RNA polymerase sigma factor SigA Bacillus subtilis (strain 168)
P74565 1.88e-13 72 29 5 204 1 sigA RNA polymerase sigma factor SigA Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
P33451 1.89e-13 72 28 5 220 3 rpoD RNA polymerase sigma factor RpoD Rickettsia prowazekii (strain Madrid E)
P52322 2.04e-13 72 29 5 204 3 sigA RNA polymerase sigma factor SigA Microcystis aeruginosa
Q4UJT1 2.12e-13 72 28 5 220 3 rpoD RNA polymerase sigma factor RpoD Rickettsia felis (strain ATCC VR-1525 / URRWXCal2)
Q92FZ8 2.22e-13 72 27 6 230 3 rpoD RNA polymerase sigma factor RpoD Rickettsia conorii (strain ATCC VR-613 / Malish 7)
P52329 2.53e-13 71 29 6 212 3 sigA RNA polymerase sigma factor SigA Enterococcus faecalis (strain ATCC 700802 / V583)
P43766 2.55e-13 72 29 7 219 3 rpoD RNA polymerase sigma factor RpoD Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
O83506 3.31e-13 72 29 3 198 3 rpoD RNA polymerase sigma factor RpoD Treponema pallidum (strain Nichols)
Q87DT7 3.32e-13 72 28 6 219 3 rpoD RNA polymerase sigma factor RpoD Xylella fastidiosa (strain Temecula1 / ATCC 700964)
Q9PDM9 3.52e-13 72 28 6 219 3 rpoD RNA polymerase sigma factor RpoD Xylella fastidiosa (strain 9a5c)
Q9ZSL6 3.71e-13 71 26 4 203 2 SIGD RNA polymerase sigma factor sigD, chloroplastic Arabidopsis thaliana
P0A4J0 4.69e-13 70 29 5 208 3 sigA RNA polymerase sigma factor SigA Streptococcus pneumoniae (strain ATCC BAA-255 / R6)
P0A4I9 4.69e-13 70 29 5 208 3 sigA RNA polymerase sigma factor SigA Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
O66381 4.75e-13 70 28 6 212 3 sigA RNA polymerase sigma factor SigA Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
Q8P4H2 4.91e-13 71 28 6 219 3 rpoD RNA polymerase sigma factor RpoD Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)
Q8PG33 5.6e-13 71 28 6 219 3 rpoD RNA polymerase sigma factor RpoD Xanthomonas axonopodis pv. citri (strain 306)
P52323 6e-13 71 29 6 212 3 rpoD RNA polymerase sigma factor RpoD Borreliella burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 / B31)
D5AQI9 7.33e-13 70 27 4 218 3 rpoD RNA polymerase sigma factor RpoD Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003)
Q9ZMY3 1e-12 70 28 6 212 3 rpoD RNA polymerase sigma factor RpoD Helicobacter pylori (strain J99 / ATCC 700824)
P57163 1.07e-12 70 28 7 219 3 rpoD RNA polymerase sigma factor RpoD Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
P32001 1.17e-12 70 28 7 219 3 rpoD RNA polymerase sigma factor RpoD Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Q99TT5 1.62e-12 69 28 6 212 1 sigA RNA polymerase sigma factor SigA Staphylococcus aureus (strain N315)
P55993 1.94e-12 69 28 6 212 1 rpoD RNA polymerase sigma factor RpoD Helicobacter pylori (strain ATCC 700392 / 26695)
Q8CP24 2.42e-12 68 28 6 212 3 sigA RNA polymerase sigma factor SigA Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
Q5HNY7 2.42e-12 68 28 6 212 3 sigA RNA polymerase sigma factor SigA Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
P0A0I9 2.66e-12 68 28 6 212 3 sigA RNA polymerase sigma factor SigA Staphylococcus aureus (strain MW2)
Q6G905 2.66e-12 68 28 6 212 3 sigA RNA polymerase sigma factor SigA Staphylococcus aureus (strain MSSA476)
Q6GGD8 2.66e-12 68 28 6 212 3 sigA RNA polymerase sigma factor SigA Staphylococcus aureus (strain MRSA252)
P0A0I8 2.66e-12 68 28 6 212 3 sigA RNA polymerase sigma factor SigA Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q5HFJ9 2.66e-12 68 28 6 212 3 sigA RNA polymerase sigma factor SigA Staphylococcus aureus (strain COL)
P0A0J0 2.66e-12 68 28 6 212 1 sigA RNA polymerase sigma factor SigA Staphylococcus aureus (strain NCTC 8325 / PS 47)
P52324 2.68e-12 69 28 4 208 3 rpoD RNA polymerase sigma factor RpoD Caulobacter vibrioides (strain ATCC 19089 / CIP 103742 / CB 15)
Q31QR8 2.86e-12 68 28 7 237 3 sigA4 RNA polymerase sigma factor SigA4 Synechococcus elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805)
Q59753 3.22e-12 68 28 4 208 3 rpoD RNA polymerase sigma factor RpoD Rhizobium meliloti (strain 1021)
Q2K619 3.22e-12 68 28 4 208 1 rpoD RNA polymerase sigma factor RpoD Rhizobium etli (strain ATCC 51251 / DSM 11541 / JCM 21823 / NBRC 15573 / CFN 42)
Q59996 3.58e-12 68 27 5 232 3 sigC Probable RNA polymerase sigma-C factor Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
P33452 3.6e-12 68 28 4 208 3 rpoD RNA polymerase sigma factor RpoD Agrobacterium fabrum (strain C58 / ATCC 33970)
P17531 3.7e-12 68 27 6 211 3 rpoD RNA polymerase sigma factor RpoD Myxococcus xanthus
P45684 3.84e-12 68 28 6 202 1 rpoS RNA polymerase sigma factor RpoS Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q72L95 4.26e-11 65 27 5 204 1 sigA RNA polymerase sigma factor SigA Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27)
Q1RKH7 4.47e-11 65 26 4 219 3 rpoD RNA polymerase sigma factor RpoD Rickettsia bellii (strain RML369-C)
Q83BB6 4.99e-11 65 27 6 219 1 rpoD RNA polymerase sigma factor RpoD Coxiella burnetii (strain RSA 493 / Nine Mile phase I)
P58290 6.26e-11 64 28 3 198 3 sigA RNA polymerase sigma factor SigA (Fragment) Lactococcus lactis subsp. cremoris
Q89B10 7.28e-11 65 27 7 219 3 rpoD RNA polymerase sigma factor RpoD Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
Q04506 8.33e-11 64 28 3 198 3 sigA RNA polymerase sigma factor SigA Lactococcus lactis subsp. lactis (strain IL1403)
P59117 1.02e-10 64 26 5 210 3 rpoD RNA polymerase sigma factor RpoD Leptospira interrogans serogroup Icterohaemorrhagiae serovar Lai (strain 56601)
P61540 1.02e-10 64 26 5 210 3 rpoD RNA polymerase sigma factor RpoD Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni (strain Fiocruz L1-130)
Q9EZJ8 1.26e-10 63 26 5 204 1 sigA RNA polymerase sigma factor SigA Thermus aquaticus
P77951 1.44e-10 63 27 6 216 1 sigA RNA polymerase sigma factor SigA Streptomyces griseus
B1VXR4 1.44e-10 63 27 6 216 2 hrdB RNA polymerase principal sigma factor HrdB Streptomyces griseus subsp. griseus (strain JCM 4626 / CBS 651.72 / NBRC 13350 / KCC S-0626 / ISP 5235)
P47491 1.48e-10 63 27 8 219 3 sigA RNA polymerase sigma factor SigA Mycoplasma genitalium (strain ATCC 33530 / DSM 19775 / NCTC 10195 / G37)
P18183 2e-10 63 27 6 216 1 hrdB RNA polymerase principal sigma factor HrdB Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
P19940 3.78e-10 62 26 8 210 1 sigG RNA polymerase sigma-G factor Bacillus subtilis (strain 168)
P78022 3.87e-10 62 27 8 219 3 sigA RNA polymerase sigma factor SigA Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1)
P9WGI1 4.04e-10 62 29 7 225 1 sigA RNA polymerase sigma factor SigA Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WGI0 4.04e-10 62 29 7 225 3 sigA RNA polymerase sigma factor SigA Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P0A603 4.04e-10 62 29 7 225 3 sigA RNA polymerase sigma factor SigA Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
P9WGI5 6.39e-10 61 27 6 204 1 sigB RNA polymerase sigma factor SigB Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WGI4 6.39e-10 61 27 6 204 3 sigB RNA polymerase sigma factor SigB Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P33118 7.06e-10 61 28 8 214 3 sigB RNA polymerase sigma factor SigB Corynebacterium diphtheriae (strain ATCC 700971 / NCTC 13129 / Biotype gravis)
O51804 1.31e-09 60 27 6 202 3 rpoS RNA polymerase sigma factor RpoS Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
P52325 1.45e-09 61 25 9 266 3 rpoD RNA polymerase sigma factor RpoD Neisseria gonorrhoeae
P33658 2.27e-09 59 27 7 225 3 sigG RNA polymerase sigma-G factor Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / IAM 19013 / LMG 5710 / NBRC 13948 / NRRL B-527 / VKM B-1787 / 2291 / W)
P77994 2.65e-09 60 25 4 212 1 sigA RNA polymerase sigma factor SigA Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
P47765 2.96e-09 59 25 6 207 3 rpoS RNA polymerase sigma factor RpoS Yersinia enterocolitica
O22056 3.97e-09 59 26 9 251 2 SIGB RNA polymerase sigma factor sigB Arabidopsis thaliana
P0DM81 6.52e-09 58 25 6 207 3 rpoS RNA polymerase sigma factor RpoS Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
F5ZTT9 6.52e-09 58 25 6 207 3 rpoS RNA polymerase sigma factor RpoS Salmonella typhimurium (strain ATCC 68169 / UK-1)
P0A2E6 6.52e-09 58 25 6 207 3 rpoS RNA polymerase sigma factor RpoS Salmonella typhi
D0ZVL4 6.52e-09 58 25 6 207 1 rpoS RNA polymerase sigma factor RpoS Salmonella typhimurium (strain 14028s / SGSC 2262)
P0A2E7 6.52e-09 58 25 6 207 3 rpoS RNA polymerase sigma factor RpoS Salmonella dublin
P35540 6.64e-09 58 25 6 207 3 rpoS RNA polymerase sigma factor RpoS Shigella flexneri
P13445 6.83e-09 58 25 6 207 1 rpoS RNA polymerase sigma factor RpoS Escherichia coli (strain K12)
Q9LD95 7.91e-09 58 23 5 224 1 SIGF RNA polymerase sigma factor sigF, chloroplastic Arabidopsis thaliana
Q9Z7F0 9.78e-09 58 25 6 208 3 sigA RNA polymerase sigma factor SigA Chlamydia pneumoniae
P18182 1e-08 58 28 5 212 1 hrdA RNA polymerase principal sigma factor HrdA Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
Q9KI19 1.39e-08 57 26 4 199 1 rpoS RNA polymerase sigma factor RpoS Coxiella burnetii (strain RSA 493 / Nine Mile phase I)
O24621 1.66e-08 57 27 6 212 2 SIGC RNA polymerase sigma factor sigC Arabidopsis thaliana
P18333 1.84e-08 57 24 7 221 1 sigA RNA polymerase sigma factor SigA Chlamydia trachomatis serovar D (strain ATCC VR-885 / DSM 19411 / UW-3/Cx)
P27785 2.65e-08 57 29 8 217 3 sigA RNA polymerase sigma factor SigA Kitasatospora aureofaciens
P18184 3.09e-08 56 28 8 218 3 hrdC RNA polymerase principal sigma factor HrdC Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
P56835 4.73e-08 56 23 6 221 3 sigA RNA polymerase sigma factor SigA Chlamydia muridarum (strain MoPn / Nigg)
Q03065 5.26e-08 56 28 6 236 3 sigB RNA polymerase sigma-B factor Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576)
O24629 2.54e-07 54 29 9 216 1 SIGA RNA polymerase sigma factor sigA Arabidopsis thaliana
Q9ZNX9 2.6e-06 51 25 3 197 1 SIGE RNA polymerase sigma factor sigE, chloroplastic/mitochondrial Arabidopsis thaliana
P62179 5.06e-06 49 24 5 228 1 sigE RNA polymerase sigma-35 factor Bacillus thuringiensis subsp. kurstaki
P62178 5.06e-06 49 24 5 228 3 sigE RNA polymerase sigma-35 factor Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711)
P62177 5.06e-06 49 24 5 228 3 sigE RNA polymerase sigma-35 factor Bacillus anthracis
P26768 5.78e-06 47 41 1 60 3 None Putative RNA polymerase sigma-G factor (Fragment) Bacillus thuringiensis subsp. kurstaki
P50512 9.87e-06 49 25 7 213 3 rpoH RNA polymerase sigma factor RpoH Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4)
P33656 1.03e-05 49 26 6 220 3 sigA RNA polymerase sigma factor SigA Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / IAM 19013 / LMG 5710 / NBRC 13948 / NRRL B-527 / VKM B-1787 / 2291 / W)
P42378 0.000272 44 22 6 212 3 rpoH RNA polymerase sigma factor RpoH Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P50509 0.000301 44 25 6 204 3 rpoH RNA polymerase sigma factor RpoH Proteus mirabilis
P44404 0.000634 43 25 9 207 3 rpoH RNA polymerase sigma factor RpoH Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P0AGB3 0.000791 43 23 6 209 1 rpoH RNA polymerase sigma factor RpoH Escherichia coli (strain K12)
P0AGB4 0.000791 43 23 6 209 3 rpoH RNA polymerase sigma factor RpoH Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AGB5 0.000791 43 23 6 209 3 rpoH RNA polymerase sigma factor RpoH Escherichia coli O157:H7
Q59914 0.000812 43 40 2 71 3 hrdD RNA polymerase principal sigma factor HrdD Streptomyces griseus
P18249 0.001 43 40 2 71 3 hrdD RNA polymerase principal sigma factor HrdD Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS06525
Feature type CDS
Gene -
Product RNA polymerase sigma factor FliA
Location 1362145 - 1362867 (strand: -1)
Length 723 (nucleotides) / 240 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_444
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF04539 Sigma-70 region 3
PF04542 Sigma-70 region 2
PF04545 Sigma-70, region 4

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1191 Transcription (K) K DNA-directed RNA polymerase specialized sigma subunit

Kegg Ortholog Annotation(s)

Virulence factor Annotation(s)

VF gene ID Protein VF ID Category
VFG002319 flagellar biosynthesis sigma factor VF0394 Motility

Protein Sequence

MSDLYTAEGVINKNSLWERYYPLIRHEALKLQVRLPASVDIDDLIQAGGIGLLHAVERFDAMQGATFATYAVQRVRGAMLDELRGRDWAPRSVRRQAREITKAVRALEQSLGRTATEQEIADSLEMDIAEYRQVLTDTNNSQLFSYDEWHEIHGESCEPVRDDEDGGNPLGLLVDESLRHQVVEAIKQLPEREKLVLTLYYQEELNLKEIGAVLDVGESRVSQLHSQAIKRLRARLKSMK

Flanking regions ( +/- flanking 50bp)

TCGGGCACGATAATAAAAGCCTTTCATGAAACTCGAAGGGTTTTCAGGTTGTGAGTGATTTGTATACCGCCGAAGGTGTTATCAACAAAAATAGCCTGTGGGAACGTTATTATCCCCTTATCCGGCACGAAGCCCTGAAATTGCAGGTAAGATTACCGGCAAGCGTTGATATTGACGACTTAATTCAGGCCGGGGGTATCGGCTTACTGCATGCGGTTGAACGGTTTGACGCCATGCAGGGCGCGACATTTGCGACCTACGCGGTACAACGGGTTCGTGGTGCAATGCTGGATGAATTGCGGGGAAGAGATTGGGCACCCCGCAGTGTGCGCCGTCAGGCGCGGGAAATAACGAAAGCGGTGCGTGCATTAGAGCAGTCATTAGGGCGCACTGCCACCGAACAGGAGATTGCTGACTCATTAGAGATGGATATAGCGGAATATCGTCAGGTGTTAACTGACACTAATAACAGCCAGCTATTTTCCTATGATGAGTGGCACGAGATCCACGGCGAGAGTTGCGAACCCGTCCGTGATGATGAAGACGGGGGAAACCCGCTCGGTTTGTTGGTAGACGAAAGTTTGCGTCACCAGGTGGTTGAGGCGATAAAACAACTACCTGAACGTGAAAAACTGGTTTTGACTCTTTACTATCAGGAAGAGCTGAACCTTAAGGAGATAGGCGCAGTGCTGGACGTAGGGGAATCCCGCGTCAGCCAGTTACACAGCCAGGCAATAAAAAGGCTGCGGGCCCGCTTAAAATCCATGAAGTAACTTTGACTTTATCTTTGATTTATTTTATTAGACTAGACTACACAAGGCGC