Homologs in group_444

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
EHELCC_01030 EHELCC_01030 100.0 Morganella morganii S2 fliA DNA-directed RNA polymerase specialized sigma subunit
NLDBIP_02430 NLDBIP_02430 100.0 Morganella morganii S4 fliA DNA-directed RNA polymerase specialized sigma subunit
LHKJJB_03945 LHKJJB_03945 100.0 Morganella morganii S3 fliA DNA-directed RNA polymerase specialized sigma subunit
HKOGLL_03100 HKOGLL_03100 100.0 Morganella morganii S5 fliA DNA-directed RNA polymerase specialized sigma subunit
F4V73_RS06525 F4V73_RS06525 97.5 Morganella psychrotolerans - RNA polymerase sigma factor FliA
PMI_RS07905 PMI_RS07905 75.4 Proteus mirabilis HI4320 - RNA polymerase sigma factor FliA

Distribution of the homologs in the orthogroup group_444

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_444

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AEM6 1.22e-125 358 73 0 239 1 fliA RNA polymerase sigma factor FliA Escherichia coli (strain K12)
P0AEM7 1.22e-125 358 73 0 239 3 fliA RNA polymerase sigma factor FliA Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AEM8 1.22e-125 358 73 0 239 3 fliA RNA polymerase sigma factor FliA Escherichia coli O157:H7
P52621 5.28e-121 346 72 0 228 3 fliA RNA polymerase sigma factor FliA Yersinia enterocolitica
P0A2E8 3.35e-120 345 70 0 239 1 fliA RNA polymerase sigma factor FliA Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A2E9 3.35e-120 345 70 0 239 3 fliA RNA polymerase sigma factor FliA Salmonella typhi
P29248 5.12e-71 220 52 1 225 3 fliA RNA polymerase sigma factor FliA Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P17211 1.99e-49 166 40 1 225 3 whiG RNA polymerase sigma factor WhiG Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
P10726 1.42e-44 153 37 2 230 1 sigD RNA polymerase sigma-D factor Bacillus subtilis (strain 168)
Q03474 2.6e-34 126 34 2 233 2 lafS RNA polymerase sigma factor for flagellar operon Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
P9WGI3 2.54e-17 81 28 4 230 1 sigF RNA polymerase sigma factor SigF Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WGI2 2.54e-17 81 28 4 230 3 sigF RNA polymerase sigma factor SigF Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P35145 1.61e-15 76 32 7 206 3 sigF RNA polymerase sigma-F factor Priestia megaterium
P37971 1.88e-15 77 28 7 235 3 sigF RNA polymerase sigma-F factor Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
Q9K5J6 1.97e-15 76 30 3 196 3 sigB RNA polymerase sigma-B factor Bacillus anthracis
P26764 1.54e-14 73 31 6 205 3 sigF RNA polymerase sigma-F factor Bacillus licheniformis
P06574 2.25e-14 73 30 5 205 1 sigB RNA polymerase sigma-B factor Bacillus subtilis (strain 168)
P07860 2.49e-14 73 32 7 205 1 sigF RNA polymerase sigma-F factor Bacillus subtilis (strain 168)
Q9ZSL6 8.34e-14 73 28 5 204 2 SIGD RNA polymerase sigma factor sigD, chloroplastic Arabidopsis thaliana
P37970 1.14e-13 72 28 7 235 3 sigF RNA polymerase sigma-F factor Kitasatospora aureofaciens
P0CZ15 1.19e-13 73 28 3 205 2 rpoD RNA polymerase sigma factor RpoD Rhodobacter capsulatus
P26683 1.64e-13 72 30 5 200 1 sigA RNA polymerase sigma factor SigA Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576)
Q9ZMY3 2.01e-13 72 29 6 212 3 rpoD RNA polymerase sigma factor RpoD Helicobacter pylori (strain J99 / ATCC 700824)
P43344 2.02e-13 70 29 7 219 3 rpoD RNA polymerase sigma factor RpoD (Fragment) Serratia marcescens
P33451 2.3e-13 72 28 5 220 3 rpoD RNA polymerase sigma factor RpoD Rickettsia prowazekii (strain Madrid E)
Q03066 2.38e-13 72 28 5 237 3 sigC RNA polymerase sigma-C factor Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576)
Q68VQ5 2.6e-13 72 28 5 220 3 rpoD RNA polymerase sigma factor RpoD Rickettsia typhi (strain ATCC VR-144 / Wilmington)
Q4UJT1 3.05e-13 72 28 5 220 3 rpoD RNA polymerase sigma factor RpoD Rickettsia felis (strain ATCC VR-1525 / URRWXCal2)
Q92FZ8 3.2e-13 72 27 6 230 3 rpoD RNA polymerase sigma factor RpoD Rickettsia conorii (strain ATCC VR-613 / Malish 7)
P52328 3.43e-13 71 29 6 212 3 sigA RNA polymerase sigma factor SigA Bacillus sp.
P55993 3.86e-13 71 29 6 212 1 rpoD RNA polymerase sigma factor RpoD Helicobacter pylori (strain ATCC 700392 / 26695)
Q92BQ6 3.91e-13 71 29 6 212 3 sigA RNA polymerase sigma factor SigA Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262)
P52331 4.18e-13 71 29 6 212 3 sigA RNA polymerase sigma factor SigA Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
Q31QG5 4.63e-13 70 30 4 209 3 sigA3 RNA polymerase sigma factor SigA3 Synechococcus elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805)
O24744 4.97e-13 71 29 7 219 3 rpoD RNA polymerase sigma factor RpoD Shewanella violacea (strain JCM 10179 / CIP 106290 / LMG 19151 / DSS12)
P43766 6.11e-13 71 29 7 219 3 rpoD RNA polymerase sigma factor RpoD Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q31QR8 7.34e-13 70 29 7 237 3 sigA4 RNA polymerase sigma factor SigA4 Synechococcus elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805)
D5AQI9 7.97e-13 70 27 4 218 3 rpoD RNA polymerase sigma factor RpoD Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003)
O83506 8.17e-13 70 29 3 198 3 rpoD RNA polymerase sigma factor RpoD Treponema pallidum (strain Nichols)
P26480 9.09e-13 70 27 6 219 1 rpoD RNA polymerase sigma factor RpoD Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q31ME3 9.97e-13 69 28 5 202 1 sigA2 RNA polymerase sigma factor SigA2 Synechococcus elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805)
P45684 1.17e-12 69 29 6 202 1 rpoS RNA polymerase sigma factor RpoS Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P52326 1.24e-12 70 27 6 224 3 rpoD RNA polymerase sigma factor RpoD Pseudomonas protegens (strain DSM 19095 / LMG 27888 / CFBP 6595 / CHA0)
O66381 1.28e-12 69 29 6 212 3 sigA RNA polymerase sigma factor SigA Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
P38023 1.32e-12 69 30 5 200 3 sigA1 RNA polymerase sigma factor SigA1 Synechococcus elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805)
Q99TT5 1.4e-12 69 29 6 212 1 sigA RNA polymerase sigma factor SigA Staphylococcus aureus (strain N315)
P06224 1.65e-12 69 29 6 212 1 sigA RNA polymerase sigma factor SigA Bacillus subtilis (strain 168)
P57163 1.7e-12 69 28 7 219 3 rpoD RNA polymerase sigma factor RpoD Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
P74565 2e-12 69 29 5 204 1 sigA RNA polymerase sigma factor SigA Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Q8CP24 2.02e-12 69 29 6 212 3 sigA RNA polymerase sigma factor SigA Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
Q5HNY7 2.02e-12 69 29 6 212 3 sigA RNA polymerase sigma factor SigA Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
P32001 2.16e-12 69 28 7 219 3 rpoD RNA polymerase sigma factor RpoD Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
P0A0I9 2.24e-12 68 29 6 212 3 sigA RNA polymerase sigma factor SigA Staphylococcus aureus (strain MW2)
Q6G905 2.24e-12 68 29 6 212 3 sigA RNA polymerase sigma factor SigA Staphylococcus aureus (strain MSSA476)
Q6GGD8 2.24e-12 68 29 6 212 3 sigA RNA polymerase sigma factor SigA Staphylococcus aureus (strain MRSA252)
P0A0I8 2.24e-12 68 29 6 212 3 sigA RNA polymerase sigma factor SigA Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q5HFJ9 2.24e-12 68 29 6 212 3 sigA RNA polymerase sigma factor SigA Staphylococcus aureus (strain COL)
P0A0J0 2.24e-12 68 29 6 212 1 sigA RNA polymerase sigma factor SigA Staphylococcus aureus (strain NCTC 8325 / PS 47)
P52322 2.52e-12 68 29 5 204 3 sigA RNA polymerase sigma factor SigA Microcystis aeruginosa
P00579 2.88e-12 69 29 7 219 1 rpoD RNA polymerase sigma factor RpoD Escherichia coli (strain K12)
P0A2E3 3.17e-12 68 29 7 219 3 rpoD RNA polymerase sigma factor RpoD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A2E4 3.17e-12 68 29 7 219 3 rpoD RNA polymerase sigma factor RpoD Salmonella typhi
P52329 3.25e-12 68 29 6 212 3 sigA RNA polymerase sigma factor SigA Enterococcus faecalis (strain ATCC 700802 / V583)
O33662 4.05e-12 68 29 5 203 3 sigA RNA polymerase sigma factor SigA Streptococcus mutans serotype c (strain ATCC 700610 / UA159)
P58290 5.11e-12 68 30 5 203 3 sigA RNA polymerase sigma factor SigA (Fragment) Lactococcus lactis subsp. cremoris
P52323 6.77e-12 68 27 5 210 3 rpoD RNA polymerase sigma factor RpoD Borreliella burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 / B31)
Q04506 7.49e-12 67 30 5 203 3 sigA RNA polymerase sigma factor SigA Lactococcus lactis subsp. lactis (strain IL1403)
P52327 8.88e-12 67 27 6 224 3 rpoD RNA polymerase sigma factor RpoD Pseudomonas putida
P52324 9.49e-12 67 28 4 208 3 rpoD RNA polymerase sigma factor RpoD Caulobacter vibrioides (strain ATCC 19089 / CIP 103742 / CB 15)
P0A4J0 1.13e-11 67 28 5 208 3 sigA RNA polymerase sigma factor SigA Streptococcus pneumoniae (strain ATCC BAA-255 / R6)
P0A4I9 1.13e-11 67 28 5 208 3 sigA RNA polymerase sigma factor SigA Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
Q2K619 1.14e-11 67 28 4 208 1 rpoD RNA polymerase sigma factor RpoD Rhizobium etli (strain ATCC 51251 / DSM 11541 / JCM 21823 / NBRC 15573 / CFN 42)
P17531 1.25e-11 67 27 6 211 3 rpoD RNA polymerase sigma factor RpoD Myxococcus xanthus
P33452 1.3e-11 67 28 4 208 3 rpoD RNA polymerase sigma factor RpoD Agrobacterium fabrum (strain C58 / ATCC 33970)
Q59753 1.38e-11 67 28 4 208 3 rpoD RNA polymerase sigma factor RpoD Rhizobium meliloti (strain 1021)
Q59996 1.38e-11 67 27 5 232 3 sigC Probable RNA polymerase sigma-C factor Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Q87DT7 1.5e-11 67 27 6 219 3 rpoD RNA polymerase sigma factor RpoD Xylella fastidiosa (strain Temecula1 / ATCC 700964)
Q9PDM9 1.5e-11 67 27 6 219 3 rpoD RNA polymerase sigma factor RpoD Xylella fastidiosa (strain 9a5c)
Q1RKH7 2.04e-11 66 27 5 220 3 rpoD RNA polymerase sigma factor RpoD Rickettsia bellii (strain RML369-C)
Q8P4H2 2.37e-11 66 27 6 219 3 rpoD RNA polymerase sigma factor RpoD Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)
Q8PG33 2.8e-11 66 27 6 219 3 rpoD RNA polymerase sigma factor RpoD Xanthomonas axonopodis pv. citri (strain 306)
Q89B10 1.28e-10 64 27 7 219 3 rpoD RNA polymerase sigma factor RpoD Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
P59117 1.42e-10 63 26 5 210 3 rpoD RNA polymerase sigma factor RpoD Leptospira interrogans serogroup Icterohaemorrhagiae serovar Lai (strain 56601)
P61540 1.42e-10 63 26 5 210 3 rpoD RNA polymerase sigma factor RpoD Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni (strain Fiocruz L1-130)
P47491 2.1e-10 63 27 8 219 3 sigA RNA polymerase sigma factor SigA Mycoplasma genitalium (strain ATCC 33530 / DSM 19775 / NCTC 10195 / G37)
Q9EZJ8 3.66e-10 62 26 5 204 1 sigA RNA polymerase sigma factor SigA Thermus aquaticus
Q72L95 3.9e-10 62 26 5 204 1 sigA RNA polymerase sigma factor SigA Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27)
P78022 4.17e-10 62 27 8 219 3 sigA RNA polymerase sigma factor SigA Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1)
P77994 5.76e-10 62 26 4 212 1 sigA RNA polymerase sigma factor SigA Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
P52325 6.9e-10 62 26 9 268 3 rpoD RNA polymerase sigma factor RpoD Neisseria gonorrhoeae
P9WGI1 7.69e-10 62 29 7 225 1 sigA RNA polymerase sigma factor SigA Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WGI0 7.69e-10 62 29 7 225 3 sigA RNA polymerase sigma factor SigA Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P0A603 7.69e-10 62 29 7 225 3 sigA RNA polymerase sigma factor SigA Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
O24621 1.68e-09 60 28 6 212 2 SIGC RNA polymerase sigma factor sigC Arabidopsis thaliana
P19940 1.83e-09 59 27 8 207 1 sigG RNA polymerase sigma-G factor Bacillus subtilis (strain 168)
P77951 1.9e-09 60 28 7 214 1 sigA RNA polymerase sigma factor SigA Streptomyces griseus
B1VXR4 1.9e-09 60 28 7 214 2 hrdB RNA polymerase principal sigma factor HrdB Streptomyces griseus subsp. griseus (strain JCM 4626 / CBS 651.72 / NBRC 13350 / KCC S-0626 / ISP 5235)
P18183 2.5e-09 60 28 7 214 1 hrdB RNA polymerase principal sigma factor HrdB Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
P9WGI5 2.72e-09 59 27 6 204 1 sigB RNA polymerase sigma factor SigB Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WGI4 2.72e-09 59 27 6 204 3 sigB RNA polymerase sigma factor SigB Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
Q83BB6 3.02e-09 60 26 6 219 1 rpoD RNA polymerase sigma factor RpoD Coxiella burnetii (strain RSA 493 / Nine Mile phase I)
P33658 3.13e-09 59 25 8 237 3 sigG RNA polymerase sigma-G factor Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / IAM 19013 / LMG 5710 / NBRC 13948 / NRRL B-527 / VKM B-1787 / 2291 / W)
Q9LD95 6.45e-09 59 23 5 224 1 SIGF RNA polymerase sigma factor sigF, chloroplastic Arabidopsis thaliana
P33118 6.49e-09 58 27 8 214 3 sigB RNA polymerase sigma factor SigB Corynebacterium diphtheriae (strain ATCC 700971 / NCTC 13129 / Biotype gravis)
O51804 6.75e-09 58 27 6 202 3 rpoS RNA polymerase sigma factor RpoS Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
O22056 7.33e-09 58 25 9 251 2 SIGB RNA polymerase sigma factor sigB Arabidopsis thaliana
Q03065 7.99e-09 58 29 6 236 3 sigB RNA polymerase sigma-B factor Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576)
P47765 1.05e-08 58 25 6 207 3 rpoS RNA polymerase sigma factor RpoS Yersinia enterocolitica
Q9KI19 1.88e-08 57 26 4 199 1 rpoS RNA polymerase sigma factor RpoS Coxiella burnetii (strain RSA 493 / Nine Mile phase I)
P35540 2.09e-08 57 25 6 207 3 rpoS RNA polymerase sigma factor RpoS Shigella flexneri
P13445 2.11e-08 57 25 6 207 1 rpoS RNA polymerase sigma factor RpoS Escherichia coli (strain K12)
P0DM81 2.36e-08 57 25 6 207 3 rpoS RNA polymerase sigma factor RpoS Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
F5ZTT9 2.36e-08 57 25 6 207 3 rpoS RNA polymerase sigma factor RpoS Salmonella typhimurium (strain ATCC 68169 / UK-1)
P0A2E6 2.36e-08 57 25 6 207 3 rpoS RNA polymerase sigma factor RpoS Salmonella typhi
D0ZVL4 2.36e-08 57 25 6 207 1 rpoS RNA polymerase sigma factor RpoS Salmonella typhimurium (strain 14028s / SGSC 2262)
P0A2E7 2.36e-08 57 25 6 207 3 rpoS RNA polymerase sigma factor RpoS Salmonella dublin
P56835 3.55e-08 57 25 8 218 3 sigA RNA polymerase sigma factor SigA Chlamydia muridarum (strain MoPn / Nigg)
P18333 4e-08 57 26 9 218 1 sigA RNA polymerase sigma factor SigA Chlamydia trachomatis serovar D (strain ATCC VR-885 / DSM 19411 / UW-3/Cx)
Q9Z7F0 4.91e-08 56 25 3 203 3 sigA RNA polymerase sigma factor SigA Chlamydia pneumoniae
P18182 5.54e-08 56 28 5 212 1 hrdA RNA polymerase principal sigma factor HrdA Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
P27785 1.12e-07 55 28 8 221 3 sigA RNA polymerase sigma factor SigA Kitasatospora aureofaciens
P18184 2.32e-07 54 28 8 218 3 hrdC RNA polymerase principal sigma factor HrdC Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
P62179 9.64e-07 51 26 6 228 1 sigE RNA polymerase sigma-35 factor Bacillus thuringiensis subsp. kurstaki
P62178 9.64e-07 51 26 6 228 3 sigE RNA polymerase sigma-35 factor Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711)
P62177 9.64e-07 51 26 6 228 3 sigE RNA polymerase sigma-35 factor Bacillus anthracis
O24629 2.57e-06 51 28 9 216 1 SIGA RNA polymerase sigma factor sigA Arabidopsis thaliana
P26768 3.56e-06 48 43 1 60 3 None Putative RNA polymerase sigma-G factor (Fragment) Bacillus thuringiensis subsp. kurstaki
Q9ZNX9 8.82e-06 49 25 3 197 1 SIGE RNA polymerase sigma factor sigE, chloroplastic/mitochondrial Arabidopsis thaliana
P06222 2.58e-05 47 24 5 228 1 sigE RNA polymerase sigma-E factor Bacillus subtilis (strain 168)
P33656 4.27e-05 47 26 6 220 3 sigA RNA polymerase sigma factor SigA Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / IAM 19013 / LMG 5710 / NBRC 13948 / NRRL B-527 / VKM B-1787 / 2291 / W)
P50512 5.21e-05 47 25 7 213 3 rpoH RNA polymerase sigma factor RpoH Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4)
Q59914 0.000496 44 42 2 71 3 hrdD RNA polymerase principal sigma factor HrdD Streptomyces griseus
P18249 0.00059 43 42 2 71 3 hrdD RNA polymerase principal sigma factor HrdD Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
Q60012 0.000676 43 42 2 71 3 hrdD RNA polymerase principal sigma factor HrdD Streptomyces viridifaciens
P44404 0.000677 43 24 8 206 3 rpoH RNA polymerase sigma factor RpoH Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P50509 0.000883 43 26 6 207 3 rpoH RNA polymerase sigma factor RpoH Proteus mirabilis
P0AGB3 0.001 43 25 7 209 1 rpoH RNA polymerase sigma factor RpoH Escherichia coli (strain K12)
P0AGB4 0.001 43 25 7 209 3 rpoH RNA polymerase sigma factor RpoH Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AGB5 0.001 43 25 7 209 3 rpoH RNA polymerase sigma factor RpoH Escherichia coli O157:H7

  • Number of RefSeq hits:

General

Source Morganella morganii S1
Locus tag FBDBKF_00515
Feature type CDS
Gene fliA
Product DNA-directed RNA polymerase specialized sigma subunit
Location 86305 - 87027 (strand: -1)
Length 723 (nucleotides) / 240 (amino acids)

Contig

Accession contig_1
Length 309072 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_444
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF04539 Sigma-70 region 3
PF04542 Sigma-70 region 2
PF04545 Sigma-70, region 4

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1191 Transcription (K) K DNA-directed RNA polymerase specialized sigma subunit

Kegg Ortholog Annotation(s)

Virulence factor Annotation(s)

VF gene ID Protein VF ID Category
VFG002319 flagellar biosynthesis sigma factor VF0394 Motility

Protein Sequence

MSDLYTAEGVINKNSLWERYYPLIRHEALKLQVRLPASVDIDDLIQAGGIGLLHAVERFDAMQGATFATYAVQRIRGAMLDELRGRDWAPRSVRRQAREITKAVRALEQSLGRAAAEQEIADSLQMDIAEYRQVLTDTNNSQLFSYDEWHEIHGESCEPVRDDDDGGNPLGLLVDESLRHQVVEAIKQLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRARLKSMK

Flanking regions ( +/- flanking 50bp)

AGGGCACGATAATAAAAGCCTTTCATGAATCTCGAAGGGTGTTTCAGGTTGTGAGTGATTTGTATACCGCCGAAGGTGTTATCAACAAAAATAGCCTGTGGGAGCGTTATTATCCCCTTATCCGGCACGAAGCCCTGAAGTTGCAGGTTAGATTACCGGCAAGCGTTGATATTGACGACTTAATTCAGGCCGGGGGTATCGGCTTGCTGCATGCAGTGGAGCGTTTTGACGCCATGCAGGGTGCCACCTTTGCAACCTATGCGGTACAACGGATCCGCGGGGCAATGCTGGATGAATTGCGGGGAAGAGATTGGGCCCCCCGCAGTGTGCGCCGTCAGGCGCGGGAAATAACCAAAGCCGTGCGTGCGCTCGAACAGTCTCTGGGGCGTGCAGCCGCAGAGCAGGAAATCGCTGATTCGTTACAGATGGATATCGCAGAATACCGTCAGGTCTTAACCGATACCAATAACAGCCAGCTGTTTTCATACGATGAGTGGCACGAAATCCACGGTGAGAGCTGCGAACCCGTCCGTGATGATGATGACGGGGGCAACCCGCTCGGTTTGTTGGTAGACGAGAGTTTGCGTCACCAGGTGGTTGAGGCGATAAAACAACTGCCTGAACGTGAAAAACTGGTTCTGACTCTTTACTATCAGGAAGAGCTGAACCTCAAGGAGATAGGCGCAGTGCTGGAAGTGGGGGAATCCCGCGTCAGCCAGTTACACAGCCAGGCAATCAAAAGGCTGCGGGCGCGCTTAAAATCCATGAAGTAACTTTGACTTTATCTTTGATTTATTTTTATTAGACTAGACTACACAAGGCG