Homologs in group_2282

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_17530 FBDBKF_17530 95.9 Morganella morganii S1 rpoD RNA polymerase sigma factor RpoD
EHELCC_17425 EHELCC_17425 95.9 Morganella morganii S2 rpoD RNA polymerase sigma factor RpoD
NLDBIP_17770 NLDBIP_17770 95.9 Morganella morganii S4 rpoD RNA polymerase sigma factor RpoD
LHKJJB_17690 LHKJJB_17690 95.9 Morganella morganii S3 rpoD RNA polymerase sigma factor RpoD
HKOGLL_17700 HKOGLL_17700 95.9 Morganella morganii S5 rpoD RNA polymerase sigma factor RpoD
PMI_RS11730 PMI_RS11730 88.6 Proteus mirabilis HI4320 rpoD RNA polymerase sigma factor RpoD

Distribution of the homologs in the orthogroup group_2282

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2282

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0A2E3 0.0 1101 88 0 615 3 rpoD RNA polymerase sigma factor RpoD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A2E4 0.0 1101 88 0 615 3 rpoD RNA polymerase sigma factor RpoD Salmonella typhi
P00579 0.0 1073 88 1 615 1 rpoD RNA polymerase sigma factor RpoD Escherichia coli (strain K12)
P57163 0.0 984 80 1 615 3 rpoD RNA polymerase sigma factor RpoD Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
P32001 0.0 977 79 1 617 3 rpoD RNA polymerase sigma factor RpoD Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Q89B10 0.0 929 73 3 617 3 rpoD RNA polymerase sigma factor RpoD Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
O24744 0.0 908 76 3 617 3 rpoD RNA polymerase sigma factor RpoD Shewanella violacea (strain JCM 10179 / CIP 106290 / LMG 19151 / DSS12)
P43766 0.0 797 66 5 631 3 rpoD RNA polymerase sigma factor RpoD Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P52326 0.0 780 67 1 610 3 rpoD RNA polymerase sigma factor RpoD Pseudomonas protegens (strain DSM 19095 / LMG 27888 / CFBP 6595 / CHA0)
P26480 0.0 766 65 4 624 1 rpoD RNA polymerase sigma factor RpoD Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P52327 0.0 744 64 7 621 3 rpoD RNA polymerase sigma factor RpoD Pseudomonas putida
Q9PDM9 0.0 698 60 5 617 3 rpoD RNA polymerase sigma factor RpoD Xylella fastidiosa (strain 9a5c)
Q87DT7 0.0 697 60 5 617 3 rpoD RNA polymerase sigma factor RpoD Xylella fastidiosa (strain Temecula1 / ATCC 700964)
Q83BB6 0.0 690 59 4 603 1 rpoD RNA polymerase sigma factor RpoD Coxiella burnetii (strain RSA 493 / Nine Mile phase I)
Q8P4H2 0.0 676 60 2 614 3 rpoD RNA polymerase sigma factor RpoD Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)
Q8PG33 0.0 675 60 2 615 3 rpoD RNA polymerase sigma factor RpoD Xanthomonas axonopodis pv. citri (strain 306)
P52325 0.0 622 54 5 617 3 rpoD RNA polymerase sigma factor RpoD Neisseria gonorrhoeae
Q59753 1.34e-176 520 47 10 656 3 rpoD RNA polymerase sigma factor RpoD Rhizobium meliloti (strain 1021)
P52324 2.25e-175 516 48 8 632 3 rpoD RNA polymerase sigma factor RpoD Caulobacter vibrioides (strain ATCC 19089 / CIP 103742 / CB 15)
P33452 3.09e-175 517 46 11 658 3 rpoD RNA polymerase sigma factor RpoD Agrobacterium fabrum (strain C58 / ATCC 33970)
Q2K619 1.09e-173 513 46 10 663 1 rpoD RNA polymerase sigma factor RpoD Rhizobium etli (strain ATCC 51251 / DSM 11541 / JCM 21823 / NBRC 15573 / CFN 42)
P17531 2e-171 508 46 8 627 3 rpoD RNA polymerase sigma factor RpoD Myxococcus xanthus
Q68VQ5 4.17e-152 456 43 10 615 3 rpoD RNA polymerase sigma factor RpoD Rickettsia typhi (strain ATCC VR-144 / Wilmington)
P33451 8.06e-152 455 43 10 615 3 rpoD RNA polymerase sigma factor RpoD Rickettsia prowazekii (strain Madrid E)
Q1RKH7 1.14e-151 455 44 13 635 3 rpoD RNA polymerase sigma factor RpoD Rickettsia bellii (strain RML369-C)
Q4UJT1 1.2e-151 454 44 11 607 3 rpoD RNA polymerase sigma factor RpoD Rickettsia felis (strain ATCC VR-1525 / URRWXCal2)
Q92FZ8 8.5e-151 452 44 12 612 3 rpoD RNA polymerase sigma factor RpoD Rickettsia conorii (strain ATCC VR-613 / Malish 7)
P43344 1.48e-149 433 97 0 215 3 rpoD RNA polymerase sigma factor RpoD (Fragment) Serratia marcescens
D5AQI9 2.82e-144 437 61 3 368 3 rpoD RNA polymerase sigma factor RpoD Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003)
P0CZ15 7.54e-141 428 60 3 368 2 rpoD RNA polymerase sigma factor RpoD Rhodobacter capsulatus
P59117 1.95e-135 411 38 10 616 3 rpoD RNA polymerase sigma factor RpoD Leptospira interrogans serogroup Icterohaemorrhagiae serovar Lai (strain 56601)
P61540 1.95e-135 411 38 10 616 3 rpoD RNA polymerase sigma factor RpoD Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni (strain Fiocruz L1-130)
O33662 1.3e-114 350 69 0 239 3 sigA RNA polymerase sigma factor SigA Streptococcus mutans serotype c (strain ATCC 700610 / UA159)
P52329 1.15e-113 347 68 0 238 3 sigA RNA polymerase sigma factor SigA Enterococcus faecalis (strain ATCC 700802 / V583)
P52329 8.53e-09 61 29 3 134 3 sigA RNA polymerase sigma factor SigA Enterococcus faecalis (strain ATCC 700802 / V583)
Q04506 6.49e-113 346 67 0 244 3 sigA RNA polymerase sigma factor SigA Lactococcus lactis subsp. lactis (strain IL1403)
P0A4J0 9.68e-113 345 62 2 274 3 sigA RNA polymerase sigma factor SigA Streptococcus pneumoniae (strain ATCC BAA-255 / R6)
P0A4J0 2.31e-06 53 32 3 134 3 sigA RNA polymerase sigma factor SigA Streptococcus pneumoniae (strain ATCC BAA-255 / R6)
P0A4I9 9.68e-113 345 62 2 274 3 sigA RNA polymerase sigma factor SigA Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
P0A4I9 2.31e-06 53 32 3 134 3 sigA RNA polymerase sigma factor SigA Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
P58290 1.36e-112 345 67 0 244 3 sigA RNA polymerase sigma factor SigA (Fragment) Lactococcus lactis subsp. cremoris
P06224 2.81e-112 344 68 0 238 1 sigA RNA polymerase sigma factor SigA Bacillus subtilis (strain 168)
P06224 3.17e-09 62 28 2 132 1 sigA RNA polymerase sigma factor SigA Bacillus subtilis (strain 168)
O66381 9.51e-112 343 62 2 273 3 sigA RNA polymerase sigma factor SigA Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
O66381 3.45e-12 72 33 2 130 3 sigA RNA polymerase sigma factor SigA Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
Q99TT5 2.04e-111 342 67 0 238 1 sigA RNA polymerase sigma factor SigA Staphylococcus aureus (strain N315)
Q99TT5 3.67e-12 72 33 2 129 1 sigA RNA polymerase sigma factor SigA Staphylococcus aureus (strain N315)
O83506 2.99e-111 350 37 17 659 3 rpoD RNA polymerase sigma factor RpoD Treponema pallidum (strain Nichols)
P0A0I9 4.24e-111 341 66 0 238 3 sigA RNA polymerase sigma factor SigA Staphylococcus aureus (strain MW2)
P0A0I9 3.48e-12 72 33 2 129 3 sigA RNA polymerase sigma factor SigA Staphylococcus aureus (strain MW2)
Q6G905 4.24e-111 341 66 0 238 3 sigA RNA polymerase sigma factor SigA Staphylococcus aureus (strain MSSA476)
Q6G905 3.48e-12 72 33 2 129 3 sigA RNA polymerase sigma factor SigA Staphylococcus aureus (strain MSSA476)
Q6GGD8 4.24e-111 341 66 0 238 3 sigA RNA polymerase sigma factor SigA Staphylococcus aureus (strain MRSA252)
Q6GGD8 3.48e-12 72 33 2 129 3 sigA RNA polymerase sigma factor SigA Staphylococcus aureus (strain MRSA252)
P0A0I8 4.24e-111 341 66 0 238 3 sigA RNA polymerase sigma factor SigA Staphylococcus aureus (strain Mu50 / ATCC 700699)
P0A0I8 3.48e-12 72 33 2 129 3 sigA RNA polymerase sigma factor SigA Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q5HFJ9 4.24e-111 341 66 0 238 3 sigA RNA polymerase sigma factor SigA Staphylococcus aureus (strain COL)
Q5HFJ9 3.48e-12 72 33 2 129 3 sigA RNA polymerase sigma factor SigA Staphylococcus aureus (strain COL)
P0A0J0 4.24e-111 341 66 0 238 1 sigA RNA polymerase sigma factor SigA Staphylococcus aureus (strain NCTC 8325 / PS 47)
P0A0J0 3.48e-12 72 33 2 129 1 sigA RNA polymerase sigma factor SigA Staphylococcus aureus (strain NCTC 8325 / PS 47)
Q8CP24 9.92e-111 340 66 0 238 3 sigA RNA polymerase sigma factor SigA Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
Q8CP24 6.42e-12 71 34 2 129 3 sigA RNA polymerase sigma factor SigA Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
Q5HNY7 9.92e-111 340 66 0 238 3 sigA RNA polymerase sigma factor SigA Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
Q5HNY7 6.42e-12 71 34 2 129 3 sigA RNA polymerase sigma factor SigA Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
Q92BQ6 4.08e-110 338 61 2 273 3 sigA RNA polymerase sigma factor SigA Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262)
Q92BQ6 1.18e-09 64 34 3 130 3 sigA RNA polymerase sigma factor SigA Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262)
P52331 4.74e-110 338 61 2 273 3 sigA RNA polymerase sigma factor SigA Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
P52331 1.2e-09 64 34 3 130 3 sigA RNA polymerase sigma factor SigA Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
P52328 6.41e-110 338 67 0 238 3 sigA RNA polymerase sigma factor SigA Bacillus sp.
P52328 2.92e-06 53 29 2 127 3 sigA RNA polymerase sigma factor SigA Bacillus sp.
Q9Z7F0 6.48e-105 332 62 0 261 3 sigA RNA polymerase sigma factor SigA Chlamydia pneumoniae
P56835 1.34e-104 331 62 0 262 3 sigA RNA polymerase sigma factor SigA Chlamydia muridarum (strain MoPn / Nigg)
P56835 7.71e-15 81 33 4 160 3 sigA RNA polymerase sigma factor SigA Chlamydia muridarum (strain MoPn / Nigg)
P33656 2.31e-104 324 63 2 273 3 sigA RNA polymerase sigma factor SigA Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / IAM 19013 / LMG 5710 / NBRC 13948 / NRRL B-527 / VKM B-1787 / 2291 / W)
P33656 8.7e-10 64 34 3 130 3 sigA RNA polymerase sigma factor SigA Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / IAM 19013 / LMG 5710 / NBRC 13948 / NRRL B-527 / VKM B-1787 / 2291 / W)
P18333 5.2e-104 330 62 0 262 1 sigA RNA polymerase sigma factor SigA Chlamydia trachomatis serovar D (strain ATCC VR-885 / DSM 19411 / UW-3/Cx)
P18333 1.64e-14 80 33 4 156 1 sigA RNA polymerase sigma factor SigA Chlamydia trachomatis serovar D (strain ATCC VR-885 / DSM 19411 / UW-3/Cx)
P77994 3.63e-102 319 59 2 272 1 sigA RNA polymerase sigma factor SigA Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
P77994 9.04e-05 48 27 2 123 1 sigA RNA polymerase sigma factor SigA Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
P18183 8.6e-102 322 59 0 252 1 hrdB RNA polymerase principal sigma factor HrdB Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
P18183 0.001 45 41 1 56 1 hrdB RNA polymerase principal sigma factor HrdB Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
P77951 9.28e-102 322 59 0 252 1 sigA RNA polymerase sigma factor SigA Streptomyces griseus
P77951 0.000665 46 42 1 56 1 sigA RNA polymerase sigma factor SigA Streptomyces griseus
B1VXR4 9.28e-102 322 59 0 252 2 hrdB RNA polymerase principal sigma factor HrdB Streptomyces griseus subsp. griseus (strain JCM 4626 / CBS 651.72 / NBRC 13350 / KCC S-0626 / ISP 5235)
B1VXR4 0.000665 46 42 1 56 2 hrdB RNA polymerase principal sigma factor HrdB Streptomyces griseus subsp. griseus (strain JCM 4626 / CBS 651.72 / NBRC 13350 / KCC S-0626 / ISP 5235)
P9WGI1 3.08e-97 310 59 0 239 1 sigA RNA polymerase sigma factor SigA Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WGI0 3.08e-97 310 59 0 239 3 sigA RNA polymerase sigma factor SigA Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P0A603 3.08e-97 310 59 0 239 3 sigA RNA polymerase sigma factor SigA Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
Q72L95 3.37e-96 304 62 3 248 1 sigA RNA polymerase sigma factor SigA Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27)
Q9EZJ8 1.1e-95 303 58 4 274 1 sigA RNA polymerase sigma factor SigA Thermus aquaticus
Q9EZJ8 0.000445 47 50 0 38 1 sigA RNA polymerase sigma factor SigA Thermus aquaticus
P26683 8.76e-95 300 59 2 248 1 sigA RNA polymerase sigma factor SigA Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576)
P55993 1.19e-94 308 54 1 265 1 rpoD RNA polymerase sigma factor RpoD Helicobacter pylori (strain ATCC 700392 / 26695)
Q9ZMY3 1.45e-94 308 54 1 265 3 rpoD RNA polymerase sigma factor RpoD Helicobacter pylori (strain J99 / ATCC 700824)
P52323 2.3e-93 303 51 1 280 3 rpoD RNA polymerase sigma factor RpoD Borreliella burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 / B31)
P52322 1.78e-92 295 53 2 283 3 sigA RNA polymerase sigma factor SigA Microcystis aeruginosa
P38023 1.89e-92 294 59 1 237 3 sigA1 RNA polymerase sigma factor SigA1 Synechococcus elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805)
P74565 3.82e-91 291 59 1 237 1 sigA RNA polymerase sigma factor SigA Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
P18182 7.91e-87 279 53 0 241 1 hrdA RNA polymerase principal sigma factor HrdA Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
P27785 5.65e-84 269 50 1 253 3 sigA RNA polymerase sigma factor SigA Kitasatospora aureofaciens
P9WGI5 5.77e-84 269 48 2 271 1 sigB RNA polymerase sigma factor SigB Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WGI4 5.77e-84 269 48 2 271 3 sigB RNA polymerase sigma factor SigB Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P33118 1.27e-83 268 52 2 240 3 sigB RNA polymerase sigma factor SigB Corynebacterium diphtheriae (strain ATCC 700971 / NCTC 13129 / Biotype gravis)
Q31ME3 4.13e-71 235 44 2 246 1 sigA2 RNA polymerase sigma factor SigA2 Synechococcus elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805)
Q03066 8.57e-71 238 46 1 244 3 sigC RNA polymerase sigma-C factor Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576)
Q59996 9.56e-71 237 47 2 250 3 sigC Probable RNA polymerase sigma-C factor Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
P47491 1.07e-70 240 49 4 254 3 sigA RNA polymerase sigma factor SigA Mycoplasma genitalium (strain ATCC 33530 / DSM 19775 / NCTC 10195 / G37)
P18249 1.55e-70 234 49 2 231 3 hrdD RNA polymerase principal sigma factor HrdD Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
P78022 6.36e-69 235 46 4 272 3 sigA RNA polymerase sigma factor SigA Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1)
Q60012 5.5e-68 228 48 2 231 3 hrdD RNA polymerase principal sigma factor HrdD Streptomyces viridifaciens
Q59914 2.02e-67 226 48 2 231 3 hrdD RNA polymerase principal sigma factor HrdD Streptomyces griseus
Q31QR8 4.91e-64 216 46 1 229 3 sigA4 RNA polymerase sigma factor SigA4 Synechococcus elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805)
O51804 1e-63 216 42 3 276 3 rpoS RNA polymerase sigma factor RpoS Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q31QG5 1.51e-63 215 42 4 255 3 sigA3 RNA polymerase sigma factor SigA3 Synechococcus elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805)
P18184 9.36e-63 214 41 1 262 3 hrdC RNA polymerase principal sigma factor HrdC Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
Q03065 1.46e-62 213 44 1 225 3 sigB RNA polymerase sigma-B factor Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576)
P47765 1.08e-61 211 42 1 247 3 rpoS RNA polymerase sigma factor RpoS Yersinia enterocolitica
Q9KI19 1.38e-61 211 45 1 240 1 rpoS RNA polymerase sigma factor RpoS Coxiella burnetii (strain RSA 493 / Nine Mile phase I)
P13445 2.68e-61 210 40 3 279 1 rpoS RNA polymerase sigma factor RpoS Escherichia coli (strain K12)
P0DM81 2.71e-61 210 40 3 279 3 rpoS RNA polymerase sigma factor RpoS Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
F5ZTT9 2.71e-61 210 40 3 279 3 rpoS RNA polymerase sigma factor RpoS Salmonella typhimurium (strain ATCC 68169 / UK-1)
P0A2E6 2.71e-61 210 40 3 279 3 rpoS RNA polymerase sigma factor RpoS Salmonella typhi
D0ZVL4 2.71e-61 210 40 3 279 1 rpoS RNA polymerase sigma factor RpoS Salmonella typhimurium (strain 14028s / SGSC 2262)
P0A2E7 2.71e-61 210 40 3 279 3 rpoS RNA polymerase sigma factor RpoS Salmonella dublin
P35540 3.63e-61 209 40 3 279 3 rpoS RNA polymerase sigma factor RpoS Shigella flexneri
P45684 1.67e-58 202 42 0 225 1 rpoS RNA polymerase sigma factor RpoS Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9LD95 4.06e-56 202 38 0 242 1 SIGF RNA polymerase sigma factor sigF, chloroplastic Arabidopsis thaliana
O22056 3.6e-50 186 39 0 237 2 SIGB RNA polymerase sigma factor sigB Arabidopsis thaliana
Q9ZSL6 1.56e-43 164 32 1 263 2 SIGD RNA polymerase sigma factor sigD, chloroplastic Arabidopsis thaliana
O24621 1.04e-38 154 33 1 240 2 SIGC RNA polymerase sigma factor sigC Arabidopsis thaliana
O24629 1.23e-36 147 34 6 236 1 SIGA RNA polymerase sigma factor sigA Arabidopsis thaliana
Q9ZNX9 1e-35 144 32 4 285 1 SIGE RNA polymerase sigma factor sigE, chloroplastic/mitochondrial Arabidopsis thaliana
Q0J7T6 1.85e-34 140 32 5 245 2 SIGA RNA polymerase sigma factor sigA Oryza sativa subsp. japonica
Q07083 5.04e-28 117 31 7 257 3 sigC RNA polymerase sigma-C factor Myxococcus xanthus
P19433 4.99e-24 104 31 8 233 3 sigB RNA polymerase sigma-B factor Myxococcus xanthus
Q01624 8.61e-24 105 29 9 255 3 sigB RNA polymerase sigma-B factor Stigmatella aurantiaca (strain DW4/3-1)
B8H3C3 1.5e-22 101 32 7 240 3 rpoH RNA polymerase sigma factor RpoH Caulobacter vibrioides (strain NA1000 / CB15N)
P0CAW9 1.5e-22 101 32 7 240 1 rpoH RNA polymerase sigma factor RpoH Caulobacter vibrioides (strain ATCC 19089 / CIP 103742 / CB 15)
P19940 9.16e-22 98 30 5 226 1 sigG RNA polymerase sigma-G factor Bacillus subtilis (strain 168)
P26764 2.38e-20 94 29 6 254 3 sigF RNA polymerase sigma-F factor Bacillus licheniformis
P33658 3.17e-20 94 28 6 227 3 sigG RNA polymerase sigma-G factor Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / IAM 19013 / LMG 5710 / NBRC 13948 / NRRL B-527 / VKM B-1787 / 2291 / W)
P07860 5.19e-20 93 28 6 245 1 sigF RNA polymerase sigma-F factor Bacillus subtilis (strain 168)
P35145 8.82e-20 92 30 7 252 3 sigF RNA polymerase sigma-F factor Priestia megaterium
P50507 9.88e-20 93 29 9 251 3 rpoH RNA polymerase sigma factor RpoH Rhizobium radiobacter
P50511 1.4e-19 92 29 7 241 3 rpoH RNA polymerase sigma factor RpoH Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
P44404 2.4e-18 89 28 7 266 3 rpoH RNA polymerase sigma factor RpoH Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P42378 3.08e-18 89 29 4 238 3 rpoH RNA polymerase sigma factor RpoH Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P0AGB3 4.92e-18 88 28 7 242 1 rpoH RNA polymerase sigma factor RpoH Escherichia coli (strain K12)
P0AGB4 4.92e-18 88 28 7 242 3 rpoH RNA polymerase sigma factor RpoH Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AGB5 4.92e-18 88 28 7 242 3 rpoH RNA polymerase sigma factor RpoH Escherichia coli O157:H7
P11539 5.67e-18 88 28 9 242 3 rpoH RNA polymerase sigma factor RpoH Citrobacter freundii
P50510 6.21e-18 88 30 8 237 3 rpoH RNA polymerase sigma factor RpoH Serratia marcescens
P50509 1.14e-17 87 27 9 261 3 rpoH RNA polymerase sigma factor RpoH Proteus mirabilis
P37971 3.1e-17 85 24 4 240 3 sigF RNA polymerase sigma-F factor Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
Q89B27 3.92e-17 85 26 5 241 3 rpoH RNA polymerase sigma factor RpoH Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
P50512 6.45e-17 85 29 7 247 3 rpoH RNA polymerase sigma factor RpoH Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4)
Q8DD54 7.67e-17 84 28 9 273 3 rpoH RNA polymerase sigma factor RpoH Vibrio vulnificus (strain CMCP6)
P50508 1.03e-16 84 26 6 241 3 rpoH RNA polymerase sigma factor RpoH Enterobacter cloacae
P37970 1.92e-16 84 24 3 238 3 sigF RNA polymerase sigma-F factor Kitasatospora aureofaciens
P12254 3.44e-15 80 27 6 241 1 sigK RNA polymerase sigma-K factor Bacillus subtilis (strain 168)
O05385 3.95e-15 79 25 9 280 3 rpoH RNA polymerase sigma factor RpoH Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q8KA76 1.73e-14 77 26 8 239 3 rpoH RNA polymerase sigma factor RpoH Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
P9WGI3 5.85e-13 72 26 5 239 1 sigF RNA polymerase sigma factor SigF Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WGI2 5.85e-13 72 26 5 239 3 sigF RNA polymerase sigma factor SigF Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P26768 7.31e-13 68 41 1 91 3 None Putative RNA polymerase sigma-G factor (Fragment) Bacillus thuringiensis subsp. kurstaki
P62181 1.3e-12 71 26 5 239 1 sigK RNA polymerase sigma-28 factor Bacillus thuringiensis subsp. kurstaki
P62180 1.3e-12 71 26 5 239 3 sigK RNA polymerase sigma-28 factor Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711)
P62182 1.3e-12 71 26 5 239 3 sigK RNA polymerase sigma-28 factor Bacillus anthracis
P0A2E8 2.89e-12 70 29 5 202 1 fliA RNA polymerase sigma factor FliA Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A2E9 2.89e-12 70 29 5 202 3 fliA RNA polymerase sigma factor FliA Salmonella typhi
P0AEM6 7.42e-11 66 28 5 202 1 fliA RNA polymerase sigma factor FliA Escherichia coli (strain K12)
P0AEM7 7.42e-11 66 28 5 202 3 fliA RNA polymerase sigma factor FliA Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AEM8 7.42e-11 66 28 5 202 3 fliA RNA polymerase sigma factor FliA Escherichia coli O157:H7
P17211 2.09e-08 59 26 5 208 3 whiG RNA polymerase sigma factor WhiG Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
P62179 6.22e-08 57 44 0 65 1 sigE RNA polymerase sigma-35 factor Bacillus thuringiensis subsp. kurstaki
P62178 6.22e-08 57 44 0 65 3 sigE RNA polymerase sigma-35 factor Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711)
P62177 6.22e-08 57 44 0 65 3 sigE RNA polymerase sigma-35 factor Bacillus anthracis
P06222 6.51e-08 57 44 0 65 1 sigE RNA polymerase sigma-E factor Bacillus subtilis (strain 168)
P29248 1.49e-07 56 24 7 248 3 fliA RNA polymerase sigma factor FliA Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P52621 1.8e-07 55 24 4 208 3 fliA RNA polymerase sigma factor FliA Yersinia enterocolitica
P06574 1.81e-07 56 23 6 234 1 sigB RNA polymerase sigma-B factor Bacillus subtilis (strain 168)
P33657 5.48e-07 54 44 0 61 3 sigE RNA polymerase sigma-E factor Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / IAM 19013 / LMG 5710 / NBRC 13948 / NRRL B-527 / VKM B-1787 / 2291 / W)
P10726 6.68e-07 54 26 5 204 1 sigD RNA polymerase sigma-D factor Bacillus subtilis (strain 168)
Q9K5J6 6.69e-07 54 25 0 124 3 sigB RNA polymerase sigma-B factor Bacillus anthracis

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS16710
Feature type CDS
Gene rpoD
Product RNA polymerase sigma factor RpoD
Location 164268 - 166163 (strand: 1)
Length 1896 (nucleotides) / 631 (amino acids)

Contig

Accession term accessions NZ_VXKB01000006 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 212134 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2282
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF00140 Sigma-70 factor, region 1.2
PF03979 Sigma-70 factor, region 1.1
PF04539 Sigma-70 region 3
PF04542 Sigma-70 region 2
PF04545 Sigma-70, region 4
PF04546 Sigma-70, non-essential region

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0568 Transcription (K) K DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03086 RNA polymerase primary sigma factor Flagellar assembly -

Protein Sequence

MPTNTNLNTQKCGYRLMEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLILAENSTDTDDDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLDQYDRVEAGEVRLSDLITGFVDPNAEEDLAPTATNIGSELPAEELNKDDTDEDEDEEEEEEETDNSIDPELARQKFDALRVQHEKTRKQIKLNGRDHPSSNAEIQLLSDVFKEFRLVPKQFDYLVSKMREMMDRVRLQERFIMKLCVEQSKMPKKNFITLFTGNETSDTWFTAAIAMNKPWSEKLQDVAEEVQRSLQRLRMIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPSPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESLRSATHEVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDE

Flanking regions ( +/- flanking 50bp)

ATGGCTGATGAAATGAAACCTTGACTGTTATTGTTGCTGGCTAAGTTGTTTTGCCGACCAACACAAACCTAAATACTCAGAAGTGTGGATACCGTCTTATGGAGCAAAACCCGCAGTCACAGCTGAAACTTCTTGTCACCCGTGGTAAGGAACAAGGCTATCTGACCTATGCTGAAGTCAATGACCATCTGCCAGAAGATATCGTCGATTCGGATCAAATCGAAGATATTATCCAGATGATCAATGATATGGGCATTCAGGTAATGGAAGAAGCACCTGATGCTGATGATCTGATACTGGCCGAGAATTCAACAGACACCGATGATGATGCAGCGGAAGCTGCTGCACAGGTTCTCTCAAGTGTGGAATCGGAGATTGGCCGGACCACTGACCCGGTGCGCATGTATATGCGCGAAATGGGAACCGTGGAACTGCTGACCCGCGAAGGCGAAATTGACATCGCCAAGCGCATCGAAGATGGCATCAATCAGGTTCAGTGTTCTGTTGCTGAATACCCTGAAGCAATTACTTATTTACTTGATCAGTACGACCGTGTTGAAGCGGGCGAAGTTCGTCTTTCTGATCTGATTACCGGCTTTGTTGATCCTAATGCTGAAGAAGATCTGGCACCGACCGCAACCAATATTGGTTCCGAGCTGCCGGCTGAAGAACTCAACAAAGACGATACTGACGAAGACGAAGACGAGGAAGAAGAAGAGGAAGAAACTGATAACAGTATCGACCCTGAACTTGCCCGTCAGAAATTTGACGCGCTGCGTGTGCAACATGAGAAAACACGTAAGCAAATCAAACTTAACGGCCGCGACCATCCGAGTTCTAATGCTGAGATTCAGCTGCTCTCTGATGTATTTAAAGAGTTCCGCTTAGTCCCGAAACAGTTTGACTATCTGGTCAGCAAAATGCGGGAAATGATGGACAGAGTCCGTCTGCAGGAACGCTTTATCATGAAACTCTGCGTTGAGCAGAGCAAAATGCCGAAGAAAAACTTTATTACCCTGTTCACCGGCAACGAAACCAGTGATACCTGGTTTACCGCTGCTATTGCAATGAACAAACCGTGGTCTGAAAAACTTCAGGACGTTGCGGAAGAAGTCCAACGCAGCCTGCAACGCCTGCGTATGATTGAAGAAGAAACCGGTCTGACCATTGAACAGGTCAAAGATATCAACCGCCGCATGTCTATCGGTGAAGCGAAAGCCCGCCGTGCGAAAAAAGAGATGGTCGAGGCGAACTTACGTCTGGTTATCTCCATCGCGAAAAAATACACCAACCGTGGTCTGCAGTTCCTGGATCTGATTCAGGAAGGGAACATTGGTCTGATGAAAGCAGTTGATAAATTTGAATACCGTCGCGGTTACAAGTTCTCAACGTATGCAACCTGGTGGATCCGTCAGGCTATCACCCGCTCTATCGCGGACCAGGCCCGTACTATCCGCATCCCGGTACATATGATTGAGACGATTAACAAACTCAACCGTATCTCCCGTCAGATGCTTCAGGAGATGGGCCGTGAGCCGTCACCGGAAGAACTGGCTGAGCGGATGCTGATGCCGGAAGATAAAATCCGCAAAGTGCTGAAAATCGCTAAAGAGCCAATCTCTATGGAGACGCCGATTGGTGATGATGAAGATTCGCACTTAGGGGACTTTATCGAAGATACCACTCTTGAGCTGCCGCTGGATTCAGCCACGTCTGAAAGCCTGCGCTCAGCAACTCATGAAGTACTCGCCGGTTTAACACCGCGTGAAGCGAAAGTTCTGCGTATGCGTTTTGGTATTGATATGAATACCGATCACACACTGGAAGAAGTGGGCAAACAGTTTGATGTAACCCGCGAACGTATCCGTCAGATTGAAGCGAAGGCACTGCGCAAACTGCGCCACCCGAGCCGTTCTGAAGTGTTACGCAGCTTCCTGGATGAGTAATCCGGTTAATCATCAGTAAAGTATCAGGCGCCGCTCATCCGGCGCCTTTT