Homologs in group_565

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01460 FBDBKF_01460 94.8 Morganella morganii S1 rpoE RNA polymerase sigma factor RpoE
EHELCC_00085 EHELCC_00085 94.8 Morganella morganii S2 rpoE RNA polymerase sigma factor RpoE
NLDBIP_03375 NLDBIP_03375 94.8 Morganella morganii S4 rpoE RNA polymerase sigma factor RpoE
LHKJJB_04890 LHKJJB_04890 94.8 Morganella morganii S3 rpoE RNA polymerase sigma factor RpoE
HKOGLL_02155 HKOGLL_02155 94.8 Morganella morganii S5 rpoE RNA polymerase sigma factor RpoE
PMI_RS09350 PMI_RS09350 90.1 Proteus mirabilis HI4320 rpoE RNA polymerase sigma factor RpoE

Distribution of the homologs in the orthogroup group_565

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_565

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0A2F0 1.61e-124 352 88 0 190 3 rpoE ECF RNA polymerase sigma-E factor Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A2F1 1.61e-124 352 88 0 190 3 rpoE ECF RNA polymerase sigma-E factor Salmonella typhi
D0ZSY9 1.61e-124 352 88 0 190 2 rpoE ECF RNA polymerase sigma-E factor Salmonella typhimurium (strain 14028s / SGSC 2262)
P0AGB9 3.96e-124 350 87 0 190 3 rpoE ECF RNA polymerase sigma-E factor Shigella flexneri
P0AGB6 3.96e-124 350 87 0 190 1 rpoE ECF RNA polymerase sigma-E factor Escherichia coli (strain K12)
P0AGB7 3.96e-124 350 87 0 190 3 rpoE ECF RNA polymerase sigma-E factor Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AGB8 3.96e-124 350 87 0 190 3 rpoE ECF RNA polymerase sigma-E factor Escherichia coli O157:H7
P44790 2.33e-100 290 71 0 189 3 rpoE ECF RNA polymerase sigma-E factor Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q06198 5.61e-91 267 65 1 191 1 algU RNA polymerase sigma-H factor Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q45585 3.52e-26 102 35 4 187 1 sigW ECF RNA polymerase sigma factor SigW Bacillus subtilis (strain 168)
A0R2D4 2.6e-18 83 32 5 173 1 sigE ECF RNA polymerase sigma factor SigE Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)
A0QTP2 3.95e-17 79 33 2 145 1 sigH ECF RNA polymerase sigma factor SigH Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)
P9WGH9 1.21e-16 77 34 3 141 1 sigH ECF RNA polymerase sigma factor SigH Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WGH8 1.21e-16 77 34 3 141 2 sigH ECF RNA polymerase sigma factor SigH Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P66808 1.21e-16 77 34 3 141 1 sigH ECF RNA polymerase sigma factor SigH Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
Q44583 3.98e-16 75 28 3 187 3 nccH RNA polymerase sigma factor NccH Alcaligenes xylosoxydans xylosoxydans
Q7AKG9 4.45e-16 76 32 2 140 1 sigR ECF RNA polymerase sigma factor SigR Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
P37978 1.2e-15 74 29 3 180 1 cnrH RNA polymerase sigma factor CnrH Cupriavidus metallidurans (strain ATCC 43123 / DSM 2839 / NBRC 102507 / CH34)
P9WGG7 1.2e-14 73 30 7 184 1 sigE ECF RNA polymerase sigma factor SigE Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WGG6 1.2e-14 73 30 7 184 3 sigE ECF RNA polymerase sigma factor SigE Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
H8F0N6 1.2e-14 73 30 7 184 1 sigE ECF RNA polymerase sigma factor SigE Mycobacterium tuberculosis (strain ATCC 35801 / TMC 107 / Erdman)
P45215 7.08e-13 67 27 3 152 3 HI_1459 Probable RNA polymerase sigma factor HI_1459 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P37929 1.71e-12 65 29 3 145 3 hrpL RNA polymerase sigma factor HrpL Pseudomonas syringae pv. syringae
O07627 1.78e-12 65 31 3 151 2 ylaC RNA polymerase sigma factor YlaC Bacillus subtilis (strain 168)
B3Q6P8 1.72e-11 63 33 3 134 1 ecfG ECF RNA polymerase sigma factor EcfG Rhodopseudomonas palustris (strain TIE-1)
O53590 1.16e-10 61 28 4 161 2 sigM ECF RNA polymerase sigma factor SigM Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
H8F2P4 1.33e-10 61 28 4 161 3 sigM ECF RNA polymerase sigma factor SigM Mycobacterium tuberculosis (strain ATCC 35801 / TMC 107 / Erdman)
P94370 1.54e-10 60 29 7 179 1 sigY RNA polymerase sigma factor SigY Bacillus subtilis (strain 168)
P9WGH1 2.22e-10 60 30 3 173 1 sigC ECF RNA polymerase sigma factor SigC Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WGH0 2.22e-10 60 30 3 173 1 sigC ECF RNA polymerase sigma factor SigC Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P66810 2.22e-10 60 30 3 173 3 sigC Probable RNA polymerase sigma-C factor Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
O05404 7.79e-10 58 32 3 135 1 sigV RNA polymerase sigma factor SigV Bacillus subtilis (strain 168)
Q9WX11 9.79e-09 56 28 3 170 1 bldN ECF RNA polymerase sigma factor BldN Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
P02964 1.57e-08 55 26 5 194 3 sigH RNA polymerase sigma-H factor Bacillus licheniformis
P46358 1.9e-08 56 24 5 191 3 rfaY Probable RNA polymerase sigma factor RfaY Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)
P17869 8.05e-08 53 25 5 194 1 sigH RNA polymerase sigma-H factor Bacillus subtilis (strain 168)
O07582 8.27e-08 52 28 5 136 1 sigM ECF RNA polymerase sigma factor SigM Bacillus subtilis (strain 168)
P9WGG5 2.23e-06 50 27 5 157 1 sigG ECF RNA polymerase sigma factor SigG Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WGG4 2.23e-06 50 27 5 157 3 sigG ECF RNA polymerase sigma factor SigG Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
O05409 0.000722 42 24 2 140 3 sigZ RNA polymerase sigma factor SigZ Bacillus subtilis (strain 168)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS01945
Feature type CDS
Gene rpoE
Product RNA polymerase sigma factor RpoE
Location 425400 - 425975 (strand: 1)
Length 576 (nucleotides) / 191 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_565
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF04542 Sigma-70 region 2
PF08281 Sigma-70, region 4

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1595 Transcription (K) K DNA-directed RNA polymerase specialized sigma subunit, sigma24 family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03088 RNA polymerase sigma-70 factor, ECF subfamily - -

Virulence factor Annotation(s)

VF gene ID Protein VF ID Category
VFG000121 alginate biosynthesis protein AlgZ/FimS VF0091 Biofilm

Protein Sequence

MSEQLTDQMLVDRVQTGDQNAFNMLVIRYQHKVASLVSRYVPQGDVPDVAQESFIKAYRAIGSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDASDAENFEASGALKEISNPENLMLSEELRAVVFRTIDSLPEDLKTAITLRELDGLSYEEIAVIMECPVGTVRSRIFRAREAIDNKVQPLIQY

Flanking regions ( +/- flanking 50bp)

GAACAGGTAAGAGAAACAGTGAAACTGAGCTTCAGGAGAGAACACTGCGCATGAGCGAGCAGTTAACAGATCAAATGCTGGTTGATCGGGTACAGACAGGGGATCAAAACGCCTTCAATATGTTGGTTATACGTTATCAGCATAAAGTGGCGAGTTTAGTTTCCCGCTATGTTCCGCAGGGTGATGTTCCGGATGTGGCGCAGGAGTCCTTTATTAAGGCATACCGCGCTATCGGGTCGTTCCGTGGTGACAGTGCATTTTATACCTGGCTGTACCGTATTGCGGTTAATACAGCAAAGAATTATCTGGTTGCTCAGGGGCGTCGTCCGCCGTCAAGTGATGTGGATGCAAGCGATGCGGAAAATTTTGAAGCATCGGGCGCATTAAAAGAAATATCGAACCCTGAGAATTTAATGTTGTCTGAAGAATTAAGAGCGGTGGTTTTCCGCACGATCGATTCCTTACCTGAGGATTTGAAAACGGCGATTACACTGCGCGAACTCGATGGTCTGAGCTATGAAGAGATAGCCGTGATTATGGAGTGTCCGGTTGGTACGGTTCGTTCCCGTATTTTCCGTGCGCGTGAAGCCATCGATAATAAAGTTCAGCCACTGATACAATATTAGTGAGCGCTTAACAACACTGAAGGGAACTTTGGCATGCAAAAAGAGACACT