Help to interpret the results
Four outputs have been generated:
General: this tab contains the description, occurence in the database and other information related to the selected GI cluster GIC32
GIs list: lists the 1 occurences of the GI cluster within the database. The table reports information on each occurence.
Orthogroup list: lists the 31 orthogroups associated with the GI cluster
Profile: phylogenetic tree annotated with
- the presence of the GI cluster of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) associated with the GI cluster in each genome.
Orthogroups are shown in red if they are found withinin the that particular GI cluster in a given genome , in green otherwise, i.e. if the orthogroup is present in the genome but not in that GI cluster.
Green homologs (same orthogroup) are not found inside the considered GI cluster.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or GI cluster prediction.
Description
| Cluster ID | GIC32 |
|---|---|
| Length | 34320 |
Occurence in the database
| GIC32 is associated with 1 different genomic islands |
Genes in magenta are AMR genes, while purple correspond to VF genes.
Links are coloured wiht a scale of gray reflecting the sequence identity: dark gray for highly conserved, light grey for features with less identity. Click on the link to visualise the percentage of identity. Beginning and end of the regions are shown as dashed line if the region shows a complete circular contig, a double line if the start or end of the region matches the start or end of a linear contig and a single line otherwise.
Genomic regions
| ID | Organism | Bioentry | Start | End | Length | |
|---|---|---|---|---|---|---|
| 65 | GI65 | Morganella psychrotolerans | NZ_VXKB01000002 | 134064 | 168384 | 34320 |
| Orthogroup | Products | Genes | |
|---|---|---|---|
| 4610 | group_4610 | - | type II restriction endonuclease (1) |
| 3729 | group_3729 | - | molecular chaperone (2) |
| 3861 | group_3861 | dkgB (2) | 2,5-didehydrogluconate reductase DkgB (2) |
| 3862 | group_3862 | - | fimbrial protein (1) type 1 fimbrial protein (1) |
| 27 | group_27 | higA (5) hipB (5) |
Antitoxin HigA (5) Transcriptional regulator, contains XRE-family HTH domain (5) XRE family transcriptional regulator (2) helix-turn-helix domain-containing protein (2) |
| 4384 | group_4384 | - | fimbrial protein (1) |
| 168 | group_168 | taaP (6) aipA (1) |
trimeric autotransporter adhesin TaaP (6) YadA-like family protein (2) trimeric autotransporter adhesin AipA (1) |
| 3647 | group_3647 | - | fimbria/pilus outer membrane usher protein (4) |
| 3648 | group_3648 | - | molecular chaperone (4) |
| 3649 | group_3649 | - | molecular chaperone (4) |
| 198 | group_198 | - | fimbrial protein (8) |
| 79 | group_79 | lysR (5) yafC (1) |
DNA-binding transcriptional regulator, LysR family (5) LysR family transcriptional regulator (5) LysR substrate-binding domain-containing protein (1) DNA-binding transcriptional regulator YafC (1) |
| 4946 | group_4946 | - | hypothetical protein (1) |
| 3032 | group_3032 | - | YdgH/BhsA/McbA-like domain-containing protein (5) DUF1471 domain-containing protein (1) |
| 3033 | group_3033 | gstA (5) | Glutathione S-transferase (5) glutathione S-transferase family protein (1) |
| 3034 | group_3034 | yobV (5) | putative DNA-binding transcriptional regulator YobV, contains HTH and WYL domains (5) YafY family protein (1) |
| 3035 | group_3035 | vsr (6) | G:T-mismatch repair DNA endonuclease Vsr, very short patch repair protein (5) DNA mismatch endonuclease Vsr (1) |
| 3930 | group_3930 | - | hypothetical protein (1) |
| 220 | group_220 | mdaB (5) | Putative NADPH-quinone reductase (modulator of drug activity B) (5) NAD(P)H-dependent oxidoreductase (3) |
| 3036 | group_3036 | - | DUF5713 domain-containing protein (5) DUF5713 family protein (1) |
| 224 | group_224 | - | DUF1240 domain-containing protein (8) |
| 3680 | group_3680 | - | type II toxin-antitoxin system HipA family toxin (3) HipA domain-containing protein (1) |
| 230 | group_230 | ompR (5) hprR (1) |
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain (5) copper/silver response regulator transcription factor (1) response regulator transcription factor HprR (1) response regulator transcription factor (1) |
| 4840 | group_4840 | - | type II restriction endonuclease (1) |
| 365 | group_365 | baeS (7) | two-component system sensor histidine kinase BaeS (7) HAMP domain-containing sensor histidine kinase (1) |
| 880 | group_880 | - | Core-binding (CB) domain-containing protein (5) integrase domain-containing protein (2) |
| 372 | group_372 | alpA (5) | DNA-binding transcriptional regulator AlpA (5) AlpA family transcriptional regulator (3) |
| 374 | group_374 | dcm (5) | DNA-cytosine methylase (5) DNA cytosine methyltransferase (3) |
| 3967 | group_3967 | - | DUF3696 domain-containing protein (1) |
| 4602 | group_4602 | - | VWA domain-containing protein (1) |
| 3839 | group_3839 | - | hypothetical protein (2) |
