Orthogroup:group_27


Homologs in group_27

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14 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_00870 FBDBKF_00870 Morganella morganii S1 higA Antitoxin HigA
FBDBKF_19620 FBDBKF_19620 Morganella morganii S1 hipB Transcriptional regulator, contains XRE-family HTH domain
EHELCC_00675 EHELCC_00675 Morganella morganii S2 higA Antitoxin HigA
EHELCC_16910 EHELCC_16910 Morganella morganii S2 hipB Transcriptional regulator, contains XRE-family HTH domain
NLDBIP_02785 NLDBIP_02785 Morganella morganii S4 higA Antitoxin HigA
NLDBIP_17540 NLDBIP_17540 Morganella morganii S4 hipB Transcriptional regulator, contains XRE-family HTH domain
LHKJJB_04300 LHKJJB_04300 Morganella morganii S3 higA Antitoxin HigA
LHKJJB_17460 LHKJJB_17460 Morganella morganii S3 hipB Transcriptional regulator, contains XRE-family HTH domain
HKOGLL_02745 HKOGLL_02745 Morganella morganii S5 higA Antitoxin HigA
HKOGLL_17275 HKOGLL_17275 Morganella morganii S5 hipB Transcriptional regulator, contains XRE-family HTH domain
F4V73_RS06860 F4V73_RS06860 Morganella psychrotolerans - XRE family transcriptional regulator
F4V73_RS10155 F4V73_RS10155 Morganella psychrotolerans - helix-turn-helix domain-containing protein
F4V73_RS13455 F4V73_RS13455 Morganella psychrotolerans - XRE family transcriptional regulator
PMI_RS15475 PMI_RS15475 Proteus mirabilis HI4320 - helix-turn-helix domain-containing protein

Distribution of group_27 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_27 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_27

Orthogroup content: 14 members

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This page summarizes the annotation of all members of the orthologous group group_27.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 higA 5
2 hipB 5
3 - 4

Product

# Product Occurence
1 Antitoxin HigA 5
2 Transcriptional regulator, contains XRE-family HTH domain 5
3 XRE family transcriptional regulator 2
4 helix-turn-helix domain-containing protein 2

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1396 6 K Transcription (K) Transcriptional regulator, contains XRE-family HTH domain
COG3620 8 K Transcription (K) Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K15773 2 HTH-type transcriptional regulator / antitoxin HipB - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF01381 13 Helix-turn-helix
PF13560 1 Helix-turn-helix domain

Annotations of the 12 SwissProt hits

Annotation Number of occurrences
Antitoxin HigA1 2
Antitoxin HipB 2
Control protein C.SmaI 1
ImmF control region 10 kDa protein 1
Immunity repressor protein 1
Putative antitoxin HigA2 1
Uncharacterized HTH-type transcriptional regulator HI_0659 1
Uncharacterized HTH-type transcriptional regulator MJ0272 1
Uncharacterized HTH-type transcriptional regulator MTH_1328 1
Uncharacterized HTH-type transcriptional regulator y4dL 1

Protein length

Min length 83
Max length 105
Mean length (sd) 99.4 (7.0)
Median length 100.0

Protein length distribution