Orthogroup:group_3648


Homologs in group_3648

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5 homologs were identified in 2 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
F4V73_RS17005 F4V73_RS17005 Morganella psychrotolerans cueR Cu(I)-responsive transcriptional regulator
F4V73_RS17030 F4V73_RS17030 Morganella psychrotolerans - MerR family transcriptional regulator
PMI_RS10150 PMI_RS10150 Proteus mirabilis HI4320 cueR Cu(I)-responsive transcriptional regulator
PMI_RS13330 PMI_RS13330 Proteus mirabilis HI4320 soxR redox-sensitive transcriptional activator SoxR
PMI_RS18275 PMI_RS18275 Proteus mirabilis HI4320 - MerR family transcriptional regulator

Distribution of group_3648 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_3648 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_3648

Orthogroup content: 5 members

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This page summarizes the annotation of all members of the orthologous group group_3648.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 cueR 2
2 - 2
3 soxR 1

Product

# Product Occurence
1 Cu(I)-responsive transcriptional regulator 2
2 MerR family transcriptional regulator 2
3 redox-sensitive transcriptional activator SoxR 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0789 5 K Transcription (K) DNA-binding transcriptional regulator, MerR family

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K13639 1 MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR - -
K19591 2 MerR family transcriptional regulator, copper efflux regulator - Multidrug resistance, efflux pump MexPQ-OpmE
K21744 1 MerR family transcriptional regulator, thiopeptide resistance regulator - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00376 2 MerR family regulatory protein
PF07739 1 TipAS antibiotic-recognition domain
PF09278 2 MerR, DNA binding
PF13411 3 MerR HTH family regulatory protein

Annotations of the 62 SwissProt hits

Annotation Number of occurrences
Albicidin resistance protein 1
HTH-type transcriptional activator SoxR homolog 1
HTH-type transcriptional activator TipA 2
HTH-type transcriptional activator mta 1
HTH-type transcriptional regulator AdhR 1
HTH-type transcriptional regulator CueR 10
HTH-type transcriptional regulator GlnR 4
HTH-type transcriptional regulator HmrR 2
HTH-type transcriptional regulator MerD 4
HTH-type transcriptional regulator SkgA 2
HTH-type transcriptional regulator TnrA 2
HTH-type transcriptional regulator YfmP 1
HTH-type transcriptional regulator ZntR 2
HTH-type transcriptional regulator ZntR homolog 1
Heavy metal-dependent transcription regulator 1 1
Heavy metal-dependent transcription regulator 2 1
Mercuric resistance operon regulatory protein 8
Mercuric resistance operon regulatory protein (Fragment) 1
Multidrug-efflux transporter 1 regulator 1
Multidrug-efflux transporter 2 regulator 1
Nodulation protein NolA 2
Nodulation protein NolA (Fragment) 1
Probable heavy metal-dependent transcriptional regulator HI_0293 1
Redox-sensitive transcriptional activator SoxR 6
Uncharacterized HTH-type transcriptional regulator HI_0186 1
Uncharacterized HTH-type transcriptional regulator PA4778 1
Uncharacterized HTH-type transcriptional regulator YdfL 1
Uncharacterized HTH-type transcriptional regulator YyaN 1
Uncharacterized HTH-type transcriptional regulator slr0701 1

Protein length

Min length 132
Max length 341
Mean length (sd) 181.0 (89.8)
Median length 148.0

Protein length distribution