COG4974

Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG4974, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 83 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Site-specific recombinase XerD
Function(s) descr. Replication, recombination and repair (L)

Occurence in the database

COG4974 is associated with 83 different proteins (see tab "Protein list" and "Profile")
The 83 proteins are classified into 13 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_110 FBDBKF_00360 46239 47390 1 Integrase Morganella morganii S1
1 group_2619 FBDBKF_03835 171075 172145 -1 xerD Site-specific recombinase XerD Morganella morganii S1
2 group_812 FBDBKF_03910 180962 181870 -1 Core-binding (CB) domain-containing protein Morganella morganii S1
3 group_817 FBDBKF_04100 5787 6701 -1 xerD site-specific tyrosine recombinase XerD Morganella morganii S1
4 group_22 FBDBKF_08955 8204 8755 1 xerD Site-specific recombinase XerD Morganella morganii S1
5 group_22 FBDBKF_09000 16444 17004 -1 xerD Site-specific recombinase XerD Morganella morganii S1
6 group_22 FBDBKF_09050 25096 25659 1 xerD Site-specific recombinase XerD Morganella morganii S1
7 group_110 FBDBKF_11145 54874 56037 -1 xerD Site-specific recombinase XerD Morganella morganii S1
8 group_3659 FBDBKF_12475 13348 14520 1 xerC Site-specific tyrosine recombinase XerC Morganella morganii S1
9 group_3453 FBDBKF_15610 53231 54400 1 xerC Tyrosine recombinase XerC Morganella morganii S1
10 group_3474 FBDBKF_16670 16781 17743 -1 Tyrosine-type recombinase/integrase Morganella morganii S1
11 group_417 FBDBKF_18750 27491 28624 1 Integrase Morganella morganii S1
12 group_3639 FBDBKF_20630 33 899 1 xerD integron integrase Morganella morganii S1
13 group_110 EHELCC_01185 261478 262629 -1 Integrase Morganella morganii S2
14 group_110 EHELCC_05080 3431 4594 1 xerD Site-specific recombinase XerD Morganella morganii S2
15 group_817 EHELCC_05390 65244 66158 -1 xerD site-specific tyrosine recombinase XerD Morganella morganii S2
16 group_812 EHELCC_06625 65233 66141 1 Core-binding (CB) domain-containing protein Morganella morganii S2
17 group_2619 EHELCC_06700 74958 76028 1 xerD Site-specific recombinase XerD Morganella morganii S2
18 group_22 EHELCC_10360 120445 121008 -1 xerD Site-specific recombinase XerD Morganella morganii S2
19 group_22 EHELCC_10410 129100 129660 1 xerD Site-specific recombinase XerD Morganella morganii S2
20 group_22 EHELCC_10455 137349 137900 -1 xerD Site-specific recombinase XerD Morganella morganii S2
21 group_3474 EHELCC_10790 196028 196990 1 Tyrosine-type recombinase/integrase Morganella morganii S2
22 group_417 EHELCC_15325 27491 28624 1 Integrase Morganella morganii S2
23 group_3453 EHELCC_15970 52531 53700 1 xerC Tyrosine recombinase XerC Morganella morganii S2
24 group_3679 EHELCC_17705 41533 42051 -1 hypothetical protein Morganella morganii S2
25 group_3659 EHELCC_19230 13454 14626 1 xerC Site-specific tyrosine recombinase XerC Morganella morganii S2
26 group_3639 EHELCC_19910 33 899 1 xerD integron integrase Morganella morganii S2
27 group_110 NLDBIP_02275 417507 418658 1 Integrase Morganella morganii S4
28 group_110 NLDBIP_05400 44504 45667 1 xerD Site-specific recombinase XerD Morganella morganii S4
29 group_817 NLDBIP_05710 106309 107223 -1 xerD site-specific tyrosine recombinase XerD Morganella morganii S4
30 group_812 NLDBIP_06950 65106 66014 1 Core-binding (CB) domain-containing protein Morganella morganii S4
31 group_2619 NLDBIP_07025 74831 75901 1 xerD Site-specific recombinase XerD Morganella morganii S4
32 group_22 NLDBIP_10705 98716 99279 -1 xerD Site-specific recombinase XerD Morganella morganii S4
33 group_22 NLDBIP_10755 107371 107931 1 xerD Site-specific recombinase XerD Morganella morganii S4
34 group_22 NLDBIP_10800 115620 116171 -1 xerD Site-specific recombinase XerD Morganella morganii S4
35 group_3474 NLDBIP_11135 174299 175261 1 Tyrosine-type recombinase/integrase Morganella morganii S4
36 group_417 NLDBIP_15855 27491 28624 1 Integrase Morganella morganii S4
37 group_3453 NLDBIP_16400 26963 28132 -1 xerC Tyrosine recombinase XerC Morganella morganii S4
38 group_3659 NLDBIP_19200 19393 20565 1 xerC Site-specific tyrosine recombinase XerC Morganella morganii S4
39 group_3679 NLDBIP_19375 17478 17996 -1 hypothetical protein Morganella morganii S4
40 group_3639 NLDBIP_19905 203 1216 -1 intI1 class 1 integron integrase IntI1 Morganella morganii S4
41 group_110 LHKJJB_02280 22028 23191 1 xerD Site-specific recombinase XerD Morganella morganii S3
42 group_817 LHKJJB_02590 83833 84747 -1 xerD site-specific tyrosine recombinase XerD Morganella morganii S3
43 group_110 LHKJJB_03790 24748 25899 1 Integrase Morganella morganii S3
44 group_812 LHKJJB_06485 28852 29760 1 Core-binding (CB) domain-containing protein Morganella morganii S3
45 group_2619 LHKJJB_06560 38577 39647 1 xerD Site-specific recombinase XerD Morganella morganii S3
46 group_3474 LHKJJB_10220 16267 17229 -1 Tyrosine-type recombinase/integrase Morganella morganii S3
47 group_22 LHKJJB_10555 75357 75908 1 xerD Site-specific recombinase XerD Morganella morganii S3
48 group_22 LHKJJB_10600 83597 84157 -1 xerD Site-specific recombinase XerD Morganella morganii S3
49 group_22 LHKJJB_10650 92249 92812 1 xerD Site-specific recombinase XerD Morganella morganii S3
50 group_417 LHKJJB_15985 88062 89195 -1 Integrase Morganella morganii S3
51 group_3453 LHKJJB_16405 52531 53700 1 xerC Tyrosine recombinase XerC Morganella morganii S3
52 group_3679 LHKJJB_18145 41533 42051 -1 hypothetical protein Morganella morganii S3
53 group_3659 LHKJJB_19090 19393 20565 1 xerC Site-specific tyrosine recombinase XerC Morganella morganii S3
54 group_3639 LHKJJB_19875 203 1069 -1 xerD integron integrase Morganella morganii S3
55 group_110 HKOGLL_03255 261683 262834 -1 Integrase Morganella morganii S5
56 group_2619 HKOGLL_04370 193740 194810 -1 xerD Site-specific recombinase XerD Morganella morganii S5
57 group_812 HKOGLL_04445 203627 204535 -1 Core-binding (CB) domain-containing protein Morganella morganii S5
58 group_817 HKOGLL_06065 5697 6611 -1 xerD site-specific tyrosine recombinase XerD Morganella morganii S5
59 group_22 HKOGLL_13615 8658 9209 1 xerD Site-specific recombinase XerD Morganella morganii S5
60 group_22 HKOGLL_13660 16898 17458 -1 xerD Site-specific recombinase XerD Morganella morganii S5
61 group_22 HKOGLL_13710 25550 26113 1 xerD Site-specific recombinase XerD Morganella morganii S5
62 group_417 HKOGLL_15105 87274 88407 -1 Integrase Morganella morganii S5
63 group_110 HKOGLL_15660 45468 46631 1 xerD Site-specific recombinase XerD Morganella morganii S5
64 group_3453 HKOGLL_16175 52531 53700 1 xerC Tyrosine recombinase XerC Morganella morganii S5
65 group_3474 HKOGLL_16385 16276 17238 -1 Tyrosine-type recombinase/integrase Morganella morganii S5
66 group_3679 HKOGLL_18935 3 521 1 hypothetical protein Morganella morganii S5
67 group_3639 HKOGLL_19705 33 899 1 xerD integron integrase Morganella morganii S5
68 group_110 F4V73_RS06340 1318441 1319592 1 site-specific integrase Morganella psychrotolerans
69 group_817 F4V73_RS08540 1763791 1764705 -1 xerD site-specific tyrosine recombinase XerD Morganella psychrotolerans
70 group_812 F4V73_RS10125 134267 135145 -1 integrase domain-containing protein Morganella psychrotolerans
71 group_22 F4V73_RS10920 325695 326258 -1 tyrosine-type DNA invertase Morganella psychrotolerans
72 group_22 F4V73_RS10970 334444 335004 1 tyrosine-type DNA invertase Morganella psychrotolerans
73 group_22 F4V73_RS11015 342690 343241 -1 tyrosine-type recombinase/integrase Morganella psychrotolerans
74 group_22 PMI_RS01270 310101 310667 -1 mrpI phase variation DNA invertase MrpI Proteus mirabilis HI4320
75 group_417 PMI_RS04385 984338 985471 -1 site-specific integrase Proteus mirabilis HI4320
76 group_417 PMI_RS04655 1029338 1030465 -1 phage integrase Arm DNA-binding domain-containing protein Proteus mirabilis HI4320
77 group_189 PMI_RS05890 1290737 1291729 -1 tyrosine-type recombinase/integrase Proteus mirabilis HI4320
78 group_189 PMI_RS09895 2145999 2146982 1 tyrosine-type recombinase/integrase Proteus mirabilis HI4320
79 group_817 PMI_RS09920 2152428 2153369 -1 xerD site-specific tyrosine recombinase XerD Proteus mirabilis HI4320
80 group_2619 PMI_RS12610 2793999 2795069 -1 site-specific integrase Proteus mirabilis HI4320
81 group_812 PMI_RS12670 2803886 2804794 -1 integrase domain-containing protein Proteus mirabilis HI4320
82 group_4607 PMI_RS13020 2886551 2886730 -1 integrase Proteus mirabilis HI4320