COG1173
Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1173, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries
within the database. 34 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.
Description
Description | ABC-type dipeptide/oligopeptide/nickel transport system, permease component |
---|---|
Function(s) descr. | Amino acid transport and metabolism (E) Inorganic ion transport and metabolism (P) |
Occurence in the database
COG1173 is associated with 34 different proteins (see tab "Protein list" and "Profile") |
The 34 proteins are classified into 5 different orthogroup(s) |
# | Orthogroup | Locus | Start | Stop | S. | Gene | Product | Organism |
---|---|---|---|---|---|---|---|---|
0 | group_961 | FBDBKF_05285 | 61737 | 62645 | -1 | oppC | oligopeptide ABC transporter permease OppC | Morganella morganii S1 |
1 | group_965 | FBDBKF_05315 | 70493 | 71317 | 1 | dppC | ABC-type dipeptide/oligopeptide/nickel transport system, permease component | Morganella morganii S1 |
2 | group_1164 | FBDBKF_06680 | 175043 | 175849 | -1 | dppC | ABC-type dipeptide/oligopeptide/nickel transport system, permease component | Morganella morganii S1 |
3 | group_2788 | FBDBKF_08930 | 3292 | 4155 | -1 | nikC | nickel ABC transporter permease subunit NikC | Morganella morganii S1 |
4 | group_1717 | FBDBKF_11980 | 44453 | 45355 | -1 | dppC | dipeptide ABC transporter permease DppC | Morganella morganii S1 |
5 | group_1164 | EHELCC_09725 | 175615 | 176421 | -1 | dppC | ABC-type dipeptide/oligopeptide/nickel transport system, permease component | Morganella morganii S2 |
6 | group_2788 | EHELCC_10480 | 141949 | 142812 | 1 | nikC | nickel ABC transporter permease subunit NikC | Morganella morganii S2 |
7 | group_965 | EHELCC_12275 | 110177 | 111001 | -1 | dppC | ABC-type dipeptide/oligopeptide/nickel transport system, permease component | Morganella morganii S2 |
8 | group_961 | EHELCC_12305 | 118849 | 119757 | 1 | oppC | oligopeptide ABC transporter permease OppC | Morganella morganii S2 |
9 | group_1717 | EHELCC_14325 | 89350 | 90252 | 1 | dppC | dipeptide ABC transporter permease DppC | Morganella morganii S2 |
10 | group_1164 | NLDBIP_10105 | 175615 | 176421 | -1 | dppC | ABC-type dipeptide/oligopeptide/nickel transport system, permease component | Morganella morganii S4 |
11 | group_2788 | NLDBIP_10825 | 120220 | 121083 | 1 | nikC | nickel ABC transporter permease subunit NikC | Morganella morganii S4 |
12 | group_965 | NLDBIP_12615 | 110132 | 110956 | -1 | dppC | ABC-type dipeptide/oligopeptide/nickel transport system, permease component | Morganella morganii S4 |
13 | group_961 | NLDBIP_12645 | 118804 | 119712 | 1 | oppC | oligopeptide ABC transporter permease OppC | Morganella morganii S4 |
14 | group_1717 | NLDBIP_15420 | 93287 | 94189 | 1 | dppC | dipeptide ABC transporter permease DppC | Morganella morganii S4 |
15 | group_1164 | LHKJJB_07650 | 40817 | 41623 | 1 | dppC | ABC-type dipeptide/oligopeptide/nickel transport system, permease component | Morganella morganii S3 |
16 | group_2788 | LHKJJB_10530 | 70445 | 71308 | -1 | nikC | nickel ABC transporter permease subunit NikC | Morganella morganii S3 |
17 | group_965 | LHKJJB_12475 | 110177 | 111001 | -1 | dppC | ABC-type dipeptide/oligopeptide/nickel transport system, permease component | Morganella morganii S3 |
18 | group_961 | LHKJJB_12505 | 118849 | 119757 | 1 | oppC | oligopeptide ABC transporter permease OppC | Morganella morganii S3 |
19 | group_1717 | LHKJJB_15190 | 44453 | 45355 | -1 | dppC | dipeptide ABC transporter permease DppC | Morganella morganii S3 |
20 | group_1164 | HKOGLL_07200 | 40817 | 41623 | 1 | dppC | ABC-type dipeptide/oligopeptide/nickel transport system, permease component | Morganella morganii S5 |
21 | group_965 | HKOGLL_11090 | 110177 | 111001 | -1 | dppC | ABC-type dipeptide/oligopeptide/nickel transport system, permease component | Morganella morganii S5 |
22 | group_961 | HKOGLL_11120 | 118849 | 119757 | 1 | oppC | oligopeptide ABC transporter permease OppC | Morganella morganii S5 |
23 | group_2788 | HKOGLL_13590 | 3746 | 4609 | -1 | nikC | nickel ABC transporter permease subunit NikC | Morganella morganii S5 |
24 | group_1717 | HKOGLL_14310 | 31116 | 32018 | -1 | dppC | dipeptide ABC transporter permease DppC | Morganella morganii S5 |
25 | group_961 | F4V73_RS05740 | 1218421 | 1219329 | -1 | oppC | oligopeptide ABC transporter permease OppC | Morganella psychrotolerans |
26 | group_965 | F4V73_RS05770 | 1227296 | 1228120 | 1 | ABC transporter permease | Morganella psychrotolerans | |
27 | group_1717 | F4V73_RS14675 | 171025 | 171927 | 1 | dppC | dipeptide ABC transporter permease DppC | Morganella psychrotolerans |
28 | group_1164 | F4V73_RS15260 | 38401 | 39207 | 1 | ABC transporter permease | Morganella psychrotolerans | |
29 | group_961 | PMI_RS07130 | 1556710 | 1557618 | -1 | oppC | oligopeptide ABC transporter permease OppC | Proteus mirabilis HI4320 |
30 | group_965 | PMI_RS07175 | 1570129 | 1570959 | 1 | ABC transporter permease | Proteus mirabilis HI4320 | |
31 | group_1164 | PMI_RS12430 | 2756381 | 2757193 | -1 | ABC transporter permease | Proteus mirabilis HI4320 | |
32 | group_1717 | PMI_RS14055 | 3120422 | 3121324 | -1 | dppC | dipeptide ABC transporter permease DppC | Proteus mirabilis HI4320 |
33 | group_2788 | PMI_RS14560 | 3228090 | 3228959 | -1 | ABC transporter permease subunit | Proteus mirabilis HI4320 |